CX046987

Overview
NameCX046987
Unique NameCX046987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5E_MOUSE (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Mus musculus GN=Ppp2r5e PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = -2
Query:  425 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVL 745
            VAERAL+ WNN++I +LI  N  VILPI+F +L R ++ HWN A+ +L  NV K F + +  +FDE  A ++ D  +EK+ +++RE  WK+LEDL   R +  + ++
Sbjct:  359 VAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQREKKKEKEREELWKKLEDLELKRGLRRDGII 465          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5E_HUMAN (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Homo sapiens GN=PPP2R5E PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = -2
Query:  425 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNEAVL 745
            VAERAL+ WNN++I +LI  N  VILPI+F +L R ++ HWN A+ +L  NV K F + +  +FDE  A ++ D  +EK+ +++RE  WK+LEDL   R +  + ++
Sbjct:  359 VAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQREKKKEKEREELWKKLEDLELKRGLRRDGII 465          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5G_RABIT (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Oryctolagus cuniculus GN=PPP2R5C PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21
Identity = 44/96 (45.83%), Postives = 69/96 (71.88%), Query Frame = -2
Query:  458 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLA 745
            VAERAL+ WNN++I +LI+ N   ILPI+FP+L RN++ HWN+ +  L  N  K+F + +Q LFD+C  +F+ +++KEK   ++RE  W ++E+LA
Sbjct:  342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLA 437          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5G_HUMAN (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Homo sapiens GN=PPP2R5C PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21
Identity = 44/96 (45.83%), Postives = 69/96 (71.88%), Query Frame = -2
Query:  458 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLA 745
            VAERAL+ WNN++I +LI+ N   ILPI+FP+L RN++ HWN+ +  L  N  K+F + +Q LFD+C  +F+ +++KEK   ++RE  W ++E+LA
Sbjct:  342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLA 437          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5D_RABIT (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 41/96 (42.71%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  458 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLA 745
            VAERAL+ WNN++I +LI+ N   +LPI+FPAL RN++ HWN+ +  L  N  K+F + +Q LFD+C  +++ ++ K +   ++RE  W+++E+LA
Sbjct:  402 VAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQYKAEKQKGRFRMKEREEMWQKIEELA 497          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5D_HUMAN (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens GN=PPP2R5D PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 41/96 (42.71%), Postives = 68/96 (70.83%), Query Frame = -2
Query:  458 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLA 745
            VAERAL+ WNN++I +LI+ N   +LPI+FPAL RN++ HWN+ +  L  N  K+F + +Q LFD+C  +++ ++ K +   ++RE  W+++E+LA
Sbjct:  418 VAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQYKAEKQKGRFRMKEREEMWQKIEELA 513          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2AD1_SCHPO (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 1 isoform OS=Schizosaccharomyces pombe GN=par1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.353e-17
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = -2
Query:  443 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAV 745
            VAERAL+ +NND+  +L+  N  +ILPII+PAL   ++ HWN+ + S+  NV K+F D + +LFDE  A + E   K+++ +  RE  W  LE++A   A+
Sbjct:  421 VAERALYFFNNDYFVHLVEENVDIILPIIYPALFEISKSHWNRVIHSMVCNVLKLFMDINPSLFDEVDAEYSESRRKKEDEEIIREERWTILENIAKENAM 521          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5A_MOUSE (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform OS=Mus musculus GN=Ppp2r5a PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.014e-17
Identity = 40/104 (38.46%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  434 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNE 745
            VAERAL+ WNN++I +LI  N   ILPI+F +L + ++ HWNQ + +L  NV K   + +  LFD+  + ++ +  +EK+ + +RE  WK+LE+L   +A+  +
Sbjct:  367 VAERALYFWNNEYILSLIEENIDKILPIMFASLYKISKEHWNQTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELQLKKALEKQ 470          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5A_HUMAN (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform OS=Homo sapiens GN=PPP2R5A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 39/104 (37.50%), Postives = 66/104 (63.46%), Query Frame = -2
Query:  434 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASRAVSNE 745
            VAERAL+ WNN++I +LI  N   ILPI+F +L + ++ HWN  + +L  NV K   + +  LFD+  + ++ +  +EK+ + +RE  WK+LE+L   +A+  +
Sbjct:  367 VAERALYFWNNEYILSLIEENIDKILPIMFASLYKISKEHWNPTIVALVYNVLKTLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELKLKKALEKQ 470          
BLAST of CX046987 vs. ExPASy Swiss-Prot
Match: 2A5B_HUMAN (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform OS=Homo sapiens GN=PPP2R5B PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  449 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR 745
            VAERAL+ WNN++I +LI  N   +LP +F  L + ++ HWNQ + SL  NV K F + +  LFDE  A ++ ++ +E++  ++R+  W+ LE+L   R
Sbjct:  373 VAERALYFWNNEYILSLIEDNCHTVLPAVFGTLYQVSKEHWNQTIVSLIYNVLKTFMEMNGKLFDELTASYKLEKQQEQQKAQERQELWQGLEELRLRR 471          
The following BLAST results are available for this feature:
BLAST of CX046987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
2A5E_MOUSE9.055e-2242.99Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5E_HUMAN9.055e-2242.99Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5G_RABIT2.635e-2145.83Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5G_HUMAN2.635e-2145.83Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5D_RABIT2.913e-2042.71Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5D_HUMAN2.913e-2042.71Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2AD1_SCHPO1.353e-1741.58Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5A_MOUSE3.014e-1738.46Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5A_HUMAN1.496e-1637.50Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5B_HUMAN5.685e-1639.39Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11D11_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11D11-H22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046987 ID=CX046987; Name=CX046987; organism=Citrus sinensis; type=EST; length=746bp
CTTTTTTTAGACTAAAAGGAACATCTTTGCATTACATAAAATAAATAATT
ATCAGGTAAGAAATCCAAAGACCTGTATAAACCAAATCCCTTATCCTTAT
GATACACAAACACCTCCATGACAGGAGAGGAAGAGGGATAACAAACAATT
AAGGAATAAGCCGAGAACCCAACGAAAGGAGACACCTCAATATCCACATA
AAATCTTCACTTTAATCATTTAGCTGGTAGATTTGCATAGTAGGACCCAA
GGGAAGTGAGACCAAACAATTCCTGTATGGCACCATTTGGGTTACTCCCT
TTAACATTCCACCTTGGCTACTTAGAATAAGCTCTTCTCAATGTGCATGC
AGCTCTCAACTAATGGCAGTAGCCCGTGGGCTGGTGCTAGGGGCAACAGC
AACAGAGTAGATGAACTTTGAGACGAGCACAGCCTCATTACTTACAGCTC
TGGAGGCAGCCAAATCTTCCAAGCGTTTCCAGGTTGATTCTCGCTTCTCC
TGTGTCTCCTTCTCCTTCATTTCGTCCTCTTGGAATCTGGCCAAGCACTC
ATCAAATAGAGCTTGATCGGCATCCGAAAAAATCTTCCTGACATTCAGTG
TCAGACTTTGAACAGCTTGATTCCAGTGACCCCTTGTGTTTCTCTCCAAA
GCTGGGAAGATTATGGGCAGTATCACTTTCCGGTTTAAGTTGATCAGATT
CCTTATGTGATCATTGTTCCACAAAAACAATGCACGTTCAGCAACC
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