CX046969

Overview
NameCX046969
Unique NameCX046969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 4.228e-61
Identity = 120/196 (61.22%), Postives = 150/196 (76.53%), Query Frame = -1
Query:  271 PVHAQGPPPANPMVQE-----RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 843
            PV A GP P   +V++     R   + S+L + RII  G  VDD +A+ +VAQ+L+L+A DP KDI IY+NSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR +LPN+RIMIHQPLGGAQG   DI+IQA E+L+ K  LNG +A HTGQ L+KI++DTDRDYF+SP EA +YGLID V+
Sbjct:    2 PVSAPGPLPT--VVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.523e-61
Identity = 121/196 (61.73%), Postives = 149/196 (76.02%), Query Frame = -1
Query:  271 PVHAQGPPPANPMVQE-----RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 843
            P+ A GP P   +V++     R   + S+L + RII  G  VDD +A+ +VAQ+L+L+A DP KDI IYVNSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR +LPN+RIMIHQPLGGAQG   DI+IQA E+L  K  LNG LA HTGQ L+KI++DTDRDYF+SP EA +YGLID V+
Sbjct:    2 PISAPGPLPT--VVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.230e-60
Identity = 111/176 (63.07%), Postives = 143/176 (81.25%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  +DD +AN+++AQLL+L+A DP KDI +Y+NSPGGS+TAGMAI+DT+++IRPDVST+CVGLAASMGAFLL+AG KGKRY+LPN+ IMIHQP GG QG  TDI+I A  +++ K +LN  LA  TGQ LE+I +DTDRDYFM+ +EAK+YG+ID VI
Sbjct:   16 ERSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVI 191          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_THEEB (ATP-dependent Clp protease proteolytic subunit 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.607e-60
Identity = 118/182 (64.84%), Postives = 141/182 (77.47%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGA------VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  GG       +DD +A+ IVAQLL+LDA DP KDI +Y+NSPGGSVTAGMAI+DTMKHIRPDV T+C GLAASMGAFLLS G  GKR +LPN+RIMIHQPLGGAQG   DI+IQA E+L+HK  LN  L+ HTGQ +E+I  DT+RD+FMS +EAK YGLID V+
Sbjct:   40 ERAFDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGGAQGQAVDIEIQAREILYHKRKLNELLSQHTGQPIERIEADTERDFFMSAEEAKAYGLIDQVV 221          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP4_PROM9 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.099e-60
Identity = 116/176 (65.91%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  ++D +++ +VAQLL+L+A DP KDI IY+NSPGGSVTAGMAI+DTM+ I PDV T+C G+AASMGAFLLS GAKGKR +LPNSRIMIHQPLGGAQG   +I+IQA E+L  K  LN  LA HTGQ LEKIN+DT+RDYF+SP EA +YGLID VI
Sbjct:   42 ERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKVI 217          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP3_ANAVT (ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 4.675e-60
Identity = 119/176 (67.61%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  +DD +AN IVAQLL+LDA D  KDI +Y+NSPGGSV AGMAI+DT++ IRPDV T+C GLAASMGAFLL+AG KGKR SLP+SRIMIHQPLGGAQG   DI+IQA E+L+ KA LN  LA HTGQ LE+I  DTDRD+FMS +EAK+YGLID VI
Sbjct:   23 ERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVI 198          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_ANASP (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.675e-60
Identity = 119/176 (67.61%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  +DD +AN IVAQLL+LDA D  KDI +Y+NSPGGSV AGMAI+DT++ IRPDV T+C GLAASMGAFLL+AG KGKR SLP+SRIMIHQPLGGAQG   DI+IQA E+L+ KA LN  LA HTGQ LE+I  DTDRD+FMS +EAK+YGLID VI
Sbjct:   41 ERAFDIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVI 216          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSM (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain M21) GN=clpP PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.106e-60
Identity = 113/176 (64.20%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  GG +DD++AN+++AQLL+L+A DP KDI +Y+NSPGG VTAGMAI+DTM++I+  VST+CVG AASMGAFLLS G KGKRYSL NSRIMIHQPLGG QG  TDI I A E+L  K  LN  LA HTGQS+EK+  DT+RDYFMS +EAK+YG+ID ++
Sbjct:   14 ERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_GEOBB (ATP-dependent Clp protease proteolytic subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpP PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.106e-60
Identity = 113/176 (64.20%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  GG +DD++AN+++AQLL+L+A DP KDI +Y+NSPGG VTAGMAI+DTM++I+  VST+CVG AASMGAFLLS G KGKRYSL NSRIMIHQPLGG QG  TDI I A E+L  K  LN  LA HTGQS+EK+  DT+RDYFMS +EAK+YG+ID ++
Sbjct:   14 ERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNPX (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain WH8102) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.106e-60
Identity = 119/196 (60.71%), Postives = 147/196 (75.00%), Query Frame = -1
Query:  271 PVHAQGPPPANPMVQE-----RFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 843
            P+ A GP P   +V++     R   + S+L + RII  G  VDD +A+ +VAQ+L+L+A DP KDI IY+NSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR +LPN+RIMIHQPLGGAQG   DI+IQA E+L  K  LNG +A HTGQ L+KI +DTDRDYF+SP EA  YGLID V+
Sbjct:   19 PISAPGPLPT--VVEQSGRGDRAFDIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGCKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLMADHTGQPLDKIAEDTDRDYFLSPAEAVQYGLIDRVV 212          
The following BLAST results are available for this feature:
BLAST of CX046969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_SYNSC4.228e-6161.22ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP2_SYNS95.523e-6161.73ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SYNWW1.230e-6063.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_THEEB1.607e-6064.84ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP4_PROM92.099e-6065.91ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP3_ANAVT4.675e-6067.61ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_ANASP4.675e-6067.61ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_GEOSM6.106e-6064.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOBB6.106e-6064.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNPX6.106e-6060.71ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046969 ID=CX046969; Name=CX046969; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTTTGATATATTTCTAAAGTTTTATTTCAGCTTAAAG
TCAAAAACTGACAGCAAAACTCATCTTTCTTCAGTTCTGTATTATACATG
TCAATGTTTCAACAATCAAATGAACTGAAAGGCAATAACAATAAGTATAA
TTTAACTCTACAAATTACCACTTCATTAATTGCAATGATCACATGGGTAG
GTCACACACTGGACTTGTCATTACCATCTGCCGCAGCGGGCAGCGGCTGG
AGTGCTTTAAGAGGATTCATGATAACACCGTCAATAAGCCCATAATCTTT
GGCTTCTTTTGGGCTCATAAAATAATCACGGTCAGTATCCTGGTTGATCT
TCTCAAGACTTTGACCAGTGTGGTAGGCAAGATACCCATTCAGGTTTGCC
TTGTGATGCAGCATTTCATTAGCCTGAATATCTATGTCGGTTTGCCCACC
TTGTGCACCACCAAGAGGCTGATGAATCATTATCCTTGAGTTTGGCAAAC
TGTATCTTTTTCCTTTGGCCCCAGCACTAAGCAGGAAAGCTCCCATACTA
GCTGCTAATCCAACACAAACAGTGGAGACATCAGGTCGAATATGCTTCAT
AGTGTCAAATATGGCCATACCGGCAGTAACTGATCCTCCTGGAGAATTGA
CATAGATAACAATATCCTTGTGAGGATCAATAGCATCAAGATAGAGAAGC
TGAGCTACAATAATGTTCGCCATGTCATCATCAACAGCTCCACCACAGCG
AATTATTCTATGCTGGAAAAGTTGACTGATAACACTCTGAAACCGCTCTT
GCACCATCGGGTTAGCAGGTGGTGGCCCTTGCGCATGTACAGGGAAGTAT
GG
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