CX046969

Overview
NameCX046969
Unique NameCX046969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_PSEA6 (ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.273e-57
Identity = 111/197 (56.35%), Postives = 144/197 (73.10%), Query Frame = -1
Query:  265 PYFPVHAQGPPPANPMVQ-ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 852
            P+ P +A  P       + ER   + S+L +  +I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGGSVTAGMAI+DTM  I+PDVSTVC+G AASMGAFLLS GAKGKRY LPN+R+MIHQPLGG QG  +D +I A E+L  K  +N  +A HTGQ  +K+ +DTDRD F+S +E+ DYGL+D V+ N
Sbjct:    5 PFDPTNALVPMVVEQTAKGERSYDIYSRLLKENVIFMVGQVEDHMANLIVAQMLFLEAENPEKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTVCIGQAASMGAFLLSGGAKGKRYCLPNARVMIHQPLGGFQGQASDFEIHAKEILSIKEKMNRLMAAHTGQDYDKVARDTDRDNFLSAQESVDYGLVDQVLAN 201          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.273e-57
Identity = 108/176 (61.36%), Postives = 139/176 (78.98%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G A+DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAGMAI+DTM+HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I A  +L  +  LN  LA  TGQ +EKI +DTDRD F++  EAK YGLID V+
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAARHILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTADEAKAYGLIDEVM 190          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_ALCBS (ATP-dependent Clp protease proteolytic subunit OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=clpP PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.273e-57
Identity = 107/176 (60.80%), Postives = 142/176 (80.68%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L++ +P KDI +Y+NSPGGSVTAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGA GKR++LPN+R+MIHQPLGG QG  +DI+I A E+L  K  LN  LA+HTGQ +E++ +DTDRD FMS  EAK+YG+ID V+
Sbjct:   25 ERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGAFLLTAGAAGKRFALPNARVMIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMSADEAKEYGIIDAVL 200          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_THICR (ATP-dependent Clp protease proteolytic subunit OS=Thiomicrospira crunogena (strain XCL-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.663e-57
Identity = 111/176 (63.07%), Postives = 139/176 (78.98%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQLL+L++ +P KDI +Y+NSPGGSVTAGMAI+DTM+ I+PDVST+C+G AASMG+FLLSAGA+GKRY+LPNSR+MIHQPLGG QG  +DI+I A E++  K  LN  LA HTGQ +E I  DTDRD FMS  EA DYGL+D V+
Sbjct:   22 ERSFDIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIYDTMRFIKPDVSTMCIGQAASMGSFLLSAGAEGKRYALPNSRVMIHQPLGGFQGQASDIEIHAKEIIQIKQKLNKALADHTGQPIEVIENDTDRDNFMSADEACDYGLVDKVL 197          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_PSEHT (ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.663e-57
Identity = 109/178 (61.24%), Postives = 139/178 (78.09%), Query Frame = -1
Query:  265 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 798
            ER   + S+L + RII   G V+D+MAN+I+AQ+L+L++ +P KDI +Y+NSPGGSVTAGMAI+DTM  I+PDVST+CVG AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  +D +I A E+L  K  LN  +A HTGQ L+ I++DTDRD FMS  +A DYG++D V  N
Sbjct:   24 ERSYDIYSRLLKERIIFLTGPVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDVISKDTDRDNFMSADQAVDYGIVDSVFKN 201          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_ACISJ (ATP-dependent Clp protease proteolytic subunit OS=Acidovorax sp. (strain JS42) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.663e-57
Identity = 109/176 (61.93%), Postives = 138/176 (78.41%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D  AN++VAQLL+L++ +P KDI  Y+NSPGGSVTAGMAI+DTM+ I+PDVST+C G AASMGAFLL+AGAKGKRYSLPNS+IMIHQ LGGA+G  TDI+I A ++L  K  +N  LA  TGQ +EK+  DT+RDYFM+  EAKDYG++D VI
Sbjct:   23 ERSYDIYSRLLKERVIFLVGEVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVTAGMAIYDTMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKEQMNRILAERTGQPIEKVKADTERDYFMTADEAKDYGIVDQVI 198          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_BURXL (ATP-dependent Clp protease proteolytic subunit 2 OS=Burkholderia xenovorans (strain LB400) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.663e-57
Identity = 108/175 (61.71%), Postives = 143/175 (81.71%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   + S+L + RI+   G V+D  AN++VAQ+L+L++ +P KDI  Y+NSPGGSV+AGMAI+DTM+ I+PDVST+C+GLAASMGAFLL+AGAKGKR++LPNSR+MIHQPLGGA+G  +DI+IQA E+L+ K  LN  LA+HTGQ +E+I +DTDRD FMS  +A+ YGL+D V
Sbjct:   38 ERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHHTGQPVERIARDTDRDNFMSGDDAQAYGLVDQV 212          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.172e-57
Identity = 105/176 (59.66%), Postives = 141/176 (80.11%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RI+  G  +DD +AN+++AQLL+L+A DP KD+ +Y+NSPGGSVTAG+AI+DTM++I+ DVST+CVG AASM A LL+AGAKGKRY+LPN+RIMIHQPLGGA+G   D++I   E+L  K  LN  L+ HTGQ +EKI +DTDRD+FMS +EAK+YG++D V+
Sbjct:   24 ERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.172e-57
Identity = 105/176 (59.66%), Postives = 141/176 (80.11%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RI+  G  +DD +AN+++AQLL+L+A DP KD+ +Y+NSPGGSVTAG+AI+DTM++I+ DVST+CVG AASM A LL+AGAKGKRY+LPN+RIMIHQPLGGA+G   D++I   E+L  K  LN  L+ HTGQ +EKI +DTDRD+FMS +EAK+YG++D V+
Sbjct:   24 ERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.172e-57
Identity = 105/176 (59.66%), Postives = 141/176 (80.11%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RI+  G  +DD +AN+++AQLL+L+A DP KD+ +Y+NSPGGSVTAG+AI+DTM++I+ DVST+CVG AASM A LL+AGAKGKRY+LPN+RIMIHQPLGGA+G   D++I   E+L  K  LN  L+ HTGQ +EKI +DTDRD+FMS +EAK+YG++D V+
Sbjct:   24 ERAYDIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
The following BLAST results are available for this feature:
BLAST of CX046969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSEA61.273e-5756.35ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ1.273e-5761.36ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALCBS1.273e-5760.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THICR1.663e-5763.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEHT1.663e-5761.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACISJ1.663e-5761.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_BURXL1.663e-5761.71ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THESQ2.172e-5759.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP12.172e-5759.66ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA2.172e-5759.66ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046969 ID=CX046969; Name=CX046969; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTTTGATATATTTCTAAAGTTTTATTTCAGCTTAAAG
TCAAAAACTGACAGCAAAACTCATCTTTCTTCAGTTCTGTATTATACATG
TCAATGTTTCAACAATCAAATGAACTGAAAGGCAATAACAATAAGTATAA
TTTAACTCTACAAATTACCACTTCATTAATTGCAATGATCACATGGGTAG
GTCACACACTGGACTTGTCATTACCATCTGCCGCAGCGGGCAGCGGCTGG
AGTGCTTTAAGAGGATTCATGATAACACCGTCAATAAGCCCATAATCTTT
GGCTTCTTTTGGGCTCATAAAATAATCACGGTCAGTATCCTGGTTGATCT
TCTCAAGACTTTGACCAGTGTGGTAGGCAAGATACCCATTCAGGTTTGCC
TTGTGATGCAGCATTTCATTAGCCTGAATATCTATGTCGGTTTGCCCACC
TTGTGCACCACCAAGAGGCTGATGAATCATTATCCTTGAGTTTGGCAAAC
TGTATCTTTTTCCTTTGGCCCCAGCACTAAGCAGGAAAGCTCCCATACTA
GCTGCTAATCCAACACAAACAGTGGAGACATCAGGTCGAATATGCTTCAT
AGTGTCAAATATGGCCATACCGGCAGTAACTGATCCTCCTGGAGAATTGA
CATAGATAACAATATCCTTGTGAGGATCAATAGCATCAAGATAGAGAAGC
TGAGCTACAATAATGTTCGCCATGTCATCATCAACAGCTCCACCACAGCG
AATTATTCTATGCTGGAAAAGTTGACTGATAACACTCTGAAACCGCTCTT
GCACCATCGGGTTAGCAGGTGGTGGCCCTTGCGCATGTACAGGGAAGTAT
GG
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