CX046969

Overview
NameCX046969
Unique NameCX046969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STAS1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpP PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.974e-60
Identity = 110/177 (62.15%), Postives = 143/177 (80.79%), Query Frame = -1
Query:  268 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 798
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I AN +L  +A LN  LA  TGQS+EKI QDTDRD F+S +EAKDYGL+D V++
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAEEAKDYGLVDQVMV 191          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_ANADF (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.974e-60
Identity = 109/178 (61.24%), Postives = 144/178 (80.90%), Query Frame = -1
Query:  265 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 798
            ER   + S+L + RI+  G  +DDD+AN+++AQLL+L++ DP KDI +Y+NSPGGSVT+G+AI+DTM++++P VST+C+G AASMGAFLL+ GA GKR+++PN+RIMIHQP+GG QG  TDIDIQA E+L  KA LN  LA HT Q LE+I +DTDRDYFM   EAK+YGLID VI++
Sbjct:   17 ERSYDIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATDIDIQAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKEYGLIDEVIVH 194          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_WOLSU (ATP-dependent Clp protease proteolytic subunit OS=Wolinella succinogenes GN=clpP PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.360e-59
Identity = 109/176 (61.93%), Postives = 143/176 (81.25%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII   G ++D +A+ IV+Q+L+L+A DP KDI +Y+NSPGG +T+GM+I+DTM +++PD+ T+C+G AASMGAFLLS G KGKR+SLPNSRIMIHQPLGGAQG  TDI+IQA E+L  K+ LNG LA +TGQ LEKI +DTDRD+FMS +E+K+YGLID V+
Sbjct:   15 ERSYDIYSRLLKDRIIMLSGEINDGVASSIVSQMLFLEAEDPEKDIYLYINSPGGVITSGMSIYDTMNYVKPDICTICIGQAASMGAFLLSCGTKGKRFSLPNSRIMIHQPLGGAQGQATDIEIQAKEILRLKSILNGILASNTGQPLEKIAKDTDRDFFMSAQESKEYGLIDNVL 190          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.777e-59
Identity = 110/175 (62.86%), Postives = 141/175 (80.57%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   +IS+L + RI+  G  +DDD+AN+IVAQLL+L++ DP KDI +Y+NSPGGSVTAG+AI+DTM++++  VST+CVG AASMGA LL AGAKGKRY+LP+SRIMIHQPLGG +G  TDI+IQA E+L  KA LN  +  HTGQS+E++ +DTDRDYFM   EAK YG+ID +
Sbjct:   17 ERSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEI 191          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNP6 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.777e-59
Identity = 120/176 (68.18%), Postives = 137/176 (77.84%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  V  D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV  G+ IFDTM HIRPDVSTVCVGLAASMGAFLL+AGAKGKR SL +SRIMIHQPLGGAQG   DI+IQANE+L+ K NLN  LA  TGQ L +I  DTDRD+FMS  EA +YGLID VI
Sbjct:   13 ERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNE7 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.777e-59
Identity = 120/176 (68.18%), Postives = 137/176 (77.84%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  V  D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV  G+ IFDTM HIRPDVSTVCVGLAASMGAFLL+AGAKGKR SL +SRIMIHQPLGGAQG   DI+IQANE+L+ K NLN  LA  TGQ L +I  DTDRD+FMS  EA +YGLID VI
Sbjct:   13 ERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.777e-59
Identity = 115/193 (59.59%), Postives = 148/193 (76.68%), Query Frame = -1
Query:  265 PVHAQGPPPANPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 843
            P+     P   P  Q ++  + ++L   RII  G  VDD++AN I+A +LYLD+ DP KDI +Y+NSPGGSV+AG+AI+DTM+H+R DV+T+CVGLAASMG+FLL+AGAKGKR SLP+SRIMIHQPLGGAQG  TDI IQA E+L+ K  LN  L+  TGQ LE+I +DTDRD+FMS ++AK YGLID V+ +
Sbjct:    2 PIGIPKVPYRLPGGQSQWIDIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFLYINSPGGSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQYGLIDQVVQH 194          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMT (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.958e-59
Identity = 111/178 (62.36%), Postives = 143/178 (80.34%), Query Frame = -1
Query:  265 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 798
            +R   + S+L + RII  G  V+D +A+ +VAQ+L+L+A DP KDI +YVNSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLLS G KGKR +LPNSRIMIHQPLGGAQG   +I+IQA E+L+ K  LN  LA HTGQ+++KI++DTDRD+F+SP+EA +YGLID V+ N
Sbjct:   13 DRAFDIYSRLLRERIIFLGTDVNDQVADALVAQMLFLEADDPEKDIQLYVNSPGGSVTAGLAIYDTMQQVSPDVITICYGLAASMGAFLLSGGTKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKVVSN 190          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.169e-59
Identity = 110/176 (62.50%), Postives = 144/176 (81.82%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G A+DD +AN+++AQ+L+L+A DP KDI +Y+NSPGGS++AGMAIFDTM++IRPDVST+CVGLAASMGAFLL+AGAKGKR++LPNS IMIHQP+GG QG   DI+I A  +L  + NLN  L+  TG+ LE+I +DTDRD+FM+ +EA++YGLID VI
Sbjct:   16 ERAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYGLIDEVI 191          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.169e-59
Identity = 110/176 (62.50%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R I  GG +DD +AN+++AQ+L+L+A DP KDI +Y+NSPGG +TAGMAI+DTM++I+PDVST+C+G AASMGAFLL+AGAKGKR+SLP +RIMIHQPLGG QG  TDIDI A E+L  +  LN  L  HTGQ  EKI +DT+RD+FMS  EAK+YG+ID VI
Sbjct:   16 ERSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191          
The following BLAST results are available for this feature:
BLAST of CX046969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STAS17.974e-6062.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADF7.974e-6061.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_WOLSU1.360e-5961.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXA1.777e-5962.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNP61.777e-5968.18ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNE71.777e-5968.18ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_GLOVI1.777e-5959.59ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP3_PROMT3.958e-5962.36ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP_MOOTA5.169e-5962.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ5.169e-5962.50ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046969 ID=CX046969; Name=CX046969; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTTTGATATATTTCTAAAGTTTTATTTCAGCTTAAAG
TCAAAAACTGACAGCAAAACTCATCTTTCTTCAGTTCTGTATTATACATG
TCAATGTTTCAACAATCAAATGAACTGAAAGGCAATAACAATAAGTATAA
TTTAACTCTACAAATTACCACTTCATTAATTGCAATGATCACATGGGTAG
GTCACACACTGGACTTGTCATTACCATCTGCCGCAGCGGGCAGCGGCTGG
AGTGCTTTAAGAGGATTCATGATAACACCGTCAATAAGCCCATAATCTTT
GGCTTCTTTTGGGCTCATAAAATAATCACGGTCAGTATCCTGGTTGATCT
TCTCAAGACTTTGACCAGTGTGGTAGGCAAGATACCCATTCAGGTTTGCC
TTGTGATGCAGCATTTCATTAGCCTGAATATCTATGTCGGTTTGCCCACC
TTGTGCACCACCAAGAGGCTGATGAATCATTATCCTTGAGTTTGGCAAAC
TGTATCTTTTTCCTTTGGCCCCAGCACTAAGCAGGAAAGCTCCCATACTA
GCTGCTAATCCAACACAAACAGTGGAGACATCAGGTCGAATATGCTTCAT
AGTGTCAAATATGGCCATACCGGCAGTAACTGATCCTCCTGGAGAATTGA
CATAGATAACAATATCCTTGTGAGGATCAATAGCATCAAGATAGAGAAGC
TGAGCTACAATAATGTTCGCCATGTCATCATCAACAGCTCCACCACAGCG
AATTATTCTATGCTGGAAAAGTTGACTGATAACACTCTGAAACCGCTCTT
GCACCATCGGGTTAGCAGGTGGTGGCCCTTGCGCATGTACAGGGAAGTAT
GG
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