CX046969

Overview
NameCX046969
Unique NameCX046969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.964e-58
Identity = 112/176 (63.64%), Postives = 137/176 (77.84%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  VDD +A+ +VAQ+L+L+A DP KDI IY+NSPGGSVTAG+AI+DTM+ + PDV T+C GLAASMGAFLL  G KGKR +LPN+RIMIHQPLGGAQG   DI+IQA E+L  K  LNG LA HTGQ L KI +DTDRD+F+SP +A +YGLID V+
Sbjct:   37 ERAFDIYSRLLRERIIFLGTGVDDQVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLCGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAVEYGLIDRVV 212          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_NITSB (ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp. (strain SB155-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.565e-58
Identity = 110/176 (62.50%), Postives = 144/176 (81.82%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII   G ++D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+GM+I+DTM +I+PDVST+C+G AASMGAFLLS+G KGKRY+LP++RIMIHQPLGGAQG  TDI+IQA E+L  K  LN  LA +TGQS++KI +DT+RD+FMS +EAK+YGLID V+
Sbjct:   16 ERSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPGGVITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGAQGQATDIEIQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSEEAKEYGLIDQVL 191          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_DESAA (ATP-dependent Clp protease proteolytic subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.565e-58
Identity = 112/178 (62.92%), Postives = 141/178 (79.21%), Query Frame = -1
Query:  265 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIMN 798
            ER   + S+L + RII  G  V+D +AN I+AQLL+L++ DP KDI  Y+NSPGGSVTAGMAI+DTM +I+P+++TVC+G AASMGA LL+AG  GKRYSLPN+RI+IHQP+GG QG  +DI IQA E+L  K  LN  LA HTG+ L+++ QDTDRDYFMSP EAK+YGLID VI+N
Sbjct:   15 ERTYDIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIYDTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQGQASDIAIQAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEAKEYGLIDHVILN 192          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_THIDA (ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.350e-58
Identity = 110/176 (62.50%), Postives = 143/176 (81.25%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D  AN+IVAQ+L+L++ +P KDI +Y+NSPGGSV+AG+AI+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKRY LPNSR+MIHQPLGG QG  +DI+I A E+L+ KA LNG LA HTGQSLE I++DTDRD FMS +++  YGL+D V+
Sbjct:   29 ERAYDIYSRLLKERVIFLVGPVNDATANLIVAQMLFLESENPDKDIYLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAEDSVKYGLVDKVL 204          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPG (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain GB-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.350e-58
Identity = 111/175 (63.43%), Postives = 137/175 (78.29%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   + S+L + R+I   G V+D MAN++VAQ+L+L+A +P KDI +Y+NSPGGSVTAGM+I+DTM+ I+PDVST+C+G A SMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI I A E+L  KA LN  LAYHTGQ LE I +DT+RD FMS   A +YGLID V
Sbjct:   31 ERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIQIHAQEILSIKARLNELLAYHTGQDLETIQRDTERDNFMSASRAAEYGLIDSV 205          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_GEOUR (ATP-dependent Clp protease proteolytic subunit OS=Geobacter uraniireducens (strain Rf4) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.350e-58
Identity = 109/176 (61.93%), Postives = 139/176 (78.98%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RI+  GGA+DD ++N+++AQLL+L+A DP KDI +Y+NSPGG VTAGMAI+DTM++I+  VST+CVG AASMGAFLLS G KGKR+SL NSRIMIHQPLGG QG  TDI I A E+L  K  LN  +A HTGQ +EK+  DT+RDYFMS ++AK+YG+ID +I
Sbjct:   14 ERSYDIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLTNSRIMIHQPLGGFQGQATDIHIHAQEILRMKKKLNELMAEHTGQPVEKLEADTERDYFMSGEDAKNYGIIDSII 189          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_BURPS (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei GN=clpP PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.350e-58
Identity = 108/175 (61.71%), Postives = 145/175 (82.86%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   + S+L + RI+   G V+D  AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AGMAI+DTM+ ++PDVST+C+GLAASMGAFLL++GAKGKRY+LPN+R+MIHQPLGGA+G  +DI+IQA E+L+ +  LN  LA+HTGQ +E+I +DTDRD FMS ++AK YGLID V
Sbjct:   38 ERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_BURP6 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 668) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.350e-58
Identity = 108/175 (61.71%), Postives = 145/175 (82.86%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   + S+L + RI+   G V+D  AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AGMAI+DTM+ ++PDVST+C+GLAASMGAFLL++GAKGKRY+LPN+R+MIHQPLGGA+G  +DI+IQA E+L+ +  LN  LA+HTGQ +E+I +DTDRD FMS ++AK YGLID V
Sbjct:   38 ERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_BURP1 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1710b) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.350e-58
Identity = 108/175 (61.71%), Postives = 145/175 (82.86%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   + S+L + RI+   G V+D  AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AGMAI+DTM+ ++PDVST+C+GLAASMGAFLL++GAKGKRY+LPN+R+MIHQPLGGA+G  +DI+IQA E+L+ +  LN  LA+HTGQ +E+I +DTDRD FMS ++AK YGLID V
Sbjct:   28 ERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_BURP0 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1106a) GN=clpP PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.350e-58
Identity = 108/175 (61.71%), Postives = 145/175 (82.86%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   + S+L + RI+   G V+D  AN++VAQLL+L++ +P KDI +Y+NSPGGSV+AGMAI+DTM+ ++PDVST+C+GLAASMGAFLL++GAKGKRY+LPN+R+MIHQPLGGA+G  +DI+IQA E+L+ +  LN  LA+HTGQ +E+I +DTDRD FMS ++AK YGLID V
Sbjct:   38 ERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212          
The following BLAST results are available for this feature:
BLAST of CX046969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_PROMM1.964e-5863.64ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_NITSB2.565e-5862.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAA2.565e-5862.92ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THIDA3.350e-5862.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEPG3.350e-5863.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOUR3.350e-5861.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURPS3.350e-5861.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP63.350e-5861.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP13.350e-5861.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP03.350e-5861.71ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046969 ID=CX046969; Name=CX046969; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTTTGATATATTTCTAAAGTTTTATTTCAGCTTAAAG
TCAAAAACTGACAGCAAAACTCATCTTTCTTCAGTTCTGTATTATACATG
TCAATGTTTCAACAATCAAATGAACTGAAAGGCAATAACAATAAGTATAA
TTTAACTCTACAAATTACCACTTCATTAATTGCAATGATCACATGGGTAG
GTCACACACTGGACTTGTCATTACCATCTGCCGCAGCGGGCAGCGGCTGG
AGTGCTTTAAGAGGATTCATGATAACACCGTCAATAAGCCCATAATCTTT
GGCTTCTTTTGGGCTCATAAAATAATCACGGTCAGTATCCTGGTTGATCT
TCTCAAGACTTTGACCAGTGTGGTAGGCAAGATACCCATTCAGGTTTGCC
TTGTGATGCAGCATTTCATTAGCCTGAATATCTATGTCGGTTTGCCCACC
TTGTGCACCACCAAGAGGCTGATGAATCATTATCCTTGAGTTTGGCAAAC
TGTATCTTTTTCCTTTGGCCCCAGCACTAAGCAGGAAAGCTCCCATACTA
GCTGCTAATCCAACACAAACAGTGGAGACATCAGGTCGAATATGCTTCAT
AGTGTCAAATATGGCCATACCGGCAGTAACTGATCCTCCTGGAGAATTGA
CATAGATAACAATATCCTTGTGAGGATCAATAGCATCAAGATAGAGAAGC
TGAGCTACAATAATGTTCGCCATGTCATCATCAACAGCTCCACCACAGCG
AATTATTCTATGCTGGAAAAGTTGACTGATAACACTCTGAAACCGCTCTT
GCACCATCGGGTTAGCAGGTGGTGGCCCTTGCGCATGTACAGGGAAGTAT
GG
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