CX046969

Overview
NameCX046969
Unique NameCX046969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_PSEE4 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas entomophila (strain L48) GN=clpP PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.715e-58
Identity = 111/175 (63.43%), Postives = 139/175 (79.43%), Query Frame = -1
Query:  274 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGV 798
            ER   + S+L + R+I   G V+D MAN++VAQLL+L+A +P KDI +Y+NSPGGSVTAGM+I+DTM+ I+PDVST+C+G A SMGAFLL+AGA GKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L+ KA LN  LA+HTGQSLE I +DT+RD FMS   A +YGLID V
Sbjct:   31 ERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAAGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDTERDNFMSAARAAEYGLIDSV 205          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STAES (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.464e-58
Identity = 107/176 (60.80%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I AN +L  +  LN  L+  TGQS+EKI QDTDRD F++  EAK+YGLID V+
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVM 190          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STAEQ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.464e-58
Identity = 107/176 (60.80%), Postives = 140/176 (79.55%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I AN +L  +  LN  L+  TGQS+EKI QDTDRD F++  EAK+YGLID V+
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVM 190          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_PSEU2 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas syringae pv. syringae (strain B728a) GN=clpP PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.464e-58
Identity = 110/176 (62.50%), Postives = 139/176 (78.98%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+I AQLL+L+A +P KDI +Y+NSPGGSVTAGM+I+DTM+ I+PDVST+C+G A SMGAFLL+ GA+GKR+ LPNSR+MIHQPLGG QG  +DIDI A E+LH +  LN  LA+HTGQSLE I +DT+RD FMS + A +YGLID VI
Sbjct:   31 ERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAAEYGLIDSVI 206          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_PSESM (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas syringae pv. tomato GN=clpP PE=3 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 7.464e-58
Identity = 110/176 (62.50%), Postives = 139/176 (78.98%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+I AQLL+L+A +P KDI +Y+NSPGGSVTAGM+I+DTM+ I+PDVST+C+G A SMGAFLL+ GA+GKR+ LPNSR+MIHQPLGG QG  +DIDI A E+LH +  LN  LA+HTGQSLE I +DT+RD FMS + A +YGLID VI
Sbjct:   31 ERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAAEYGLIDSVI 206          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_PSE14 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=clpP PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.464e-58
Identity = 110/176 (62.50%), Postives = 139/176 (78.98%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+I AQLL+L+A +P KDI +Y+NSPGGSVTAGM+I+DTM+ I+PDVST+C+G A SMGAFLL+ GA+GKR+ LPNSR+MIHQPLGG QG  +DIDI A E+LH +  LN  LA+HTGQSLE I +DT+RD FMS + A +YGLID VI
Sbjct:   31 ERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAAEYGLIDSVI 206          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STACT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus carnosus (strain TM300) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 107/176 (60.80%), Postives = 141/176 (80.11%), Query Frame = -1
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G A+DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I A  +L  +A LN  LA  TGQS+E+I +DTDRD F++  EAK+YGLID V+
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEVM 190          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/177 (59.89%), Postives = 142/177 (80.23%), Query Frame = -1
Query:  268 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 798
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I AN +L  +  LN  L+  TGQS+EKI +DTDRD F++ +EAK+YGLID V++
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMV 191          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STAAT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/177 (59.89%), Postives = 142/177 (80.23%), Query Frame = -1
Query:  268 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 798
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I AN +L  +  LN  L+  TGQS+EKI +DTDRD F++ +EAK+YGLID V++
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMV 191          
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STAAS (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MSSA476) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/177 (59.89%), Postives = 142/177 (80.23%), Query Frame = -1
Query:  268 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 798
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I AN +L  +  LN  L+  TGQS+EKI +DTDRD F++ +EAK+YGLID V++
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMV 191          
The following BLAST results are available for this feature:
BLAST of CX046969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSEE45.715e-5863.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAES7.464e-5860.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAEQ7.464e-5860.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEU27.464e-5862.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSESM7.464e-5862.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSE147.464e-5862.50ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STACT9.748e-5860.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW9.748e-5859.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAT9.748e-5859.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAS9.748e-5859.89ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_11C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046969 ID=CX046969; Name=CX046969; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTTTGATATATTTCTAAAGTTTTATTTCAGCTTAAAG
TCAAAAACTGACAGCAAAACTCATCTTTCTTCAGTTCTGTATTATACATG
TCAATGTTTCAACAATCAAATGAACTGAAAGGCAATAACAATAAGTATAA
TTTAACTCTACAAATTACCACTTCATTAATTGCAATGATCACATGGGTAG
GTCACACACTGGACTTGTCATTACCATCTGCCGCAGCGGGCAGCGGCTGG
AGTGCTTTAAGAGGATTCATGATAACACCGTCAATAAGCCCATAATCTTT
GGCTTCTTTTGGGCTCATAAAATAATCACGGTCAGTATCCTGGTTGATCT
TCTCAAGACTTTGACCAGTGTGGTAGGCAAGATACCCATTCAGGTTTGCC
TTGTGATGCAGCATTTCATTAGCCTGAATATCTATGTCGGTTTGCCCACC
TTGTGCACCACCAAGAGGCTGATGAATCATTATCCTTGAGTTTGGCAAAC
TGTATCTTTTTCCTTTGGCCCCAGCACTAAGCAGGAAAGCTCCCATACTA
GCTGCTAATCCAACACAAACAGTGGAGACATCAGGTCGAATATGCTTCAT
AGTGTCAAATATGGCCATACCGGCAGTAACTGATCCTCCTGGAGAATTGA
CATAGATAACAATATCCTTGTGAGGATCAATAGCATCAAGATAGAGAAGC
TGAGCTACAATAATGTTCGCCATGTCATCATCAACAGCTCCACCACAGCG
AATTATTCTATGCTGGAAAAGTTGACTGATAACACTCTGAAACCGCTCTT
GCACCATCGGGTTAGCAGGTGGTGGCCCTTGCGCATGTACAGGGAAGTAT
GG
back to top