CX046969

Overview
NameCX046969
Unique NameCX046969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/177 (59.89%), Postives = 142/177 (80.23%), Query Frame = -1 
Query:  268 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVIM 798
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PDV T+C+G+AASMG+FLL+AGAKGKR++LPN+ +MIHQPLGGAQG  T+I+I AN +L  +  LN  L+  TGQS+EKI +DTDRD F++ +EAK+YGLID V++
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMV 191
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/176 (60.23%), Postives = 141/176 (80.11%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L  K  +N  +A+HTGQSLE+I +DT+RD F+S  EA +YGL+D ++
Sbjct:   28 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/176 (60.23%), Postives = 141/176 (80.11%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L  K  +N  +A+HTGQSLE+I +DT+RD F+S  EA +YGL+D ++
Sbjct:   28 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/176 (60.23%), Postives = 141/176 (80.11%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L  K  +N  +A+HTGQSLE+I +DT+RD F+S  EA +YGL+D ++
Sbjct:   28 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/176 (60.23%), Postives = 141/176 (80.11%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L  K  +N  +A+HTGQSLE+I +DT+RD F+S  EA +YGL+D ++
Sbjct:   28 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SALHS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/176 (60.23%), Postives = 141/176 (80.11%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L  K  +N  +A+HTGQSLE+I +DT+RD F+S  EA +YGL+D ++
Sbjct:   28 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SALEP (ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/176 (60.23%), Postives = 141/176 (80.11%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L  K  +N  +A+HTGQSLE+I +DT+RD F+S  EA +YGL+D ++
Sbjct:   28 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_SALCH (ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis GN=clpP PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 106/176 (60.23%), Postives = 141/176 (80.11%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I   G V+D MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DTM+ I+PDVST+C+G AASMGAFLL+AGAKGKR+ LPNSR+MIHQPLGG QG  TDI+I A E+L  K  +N  +A+HTGQSLE+I +DT+RD F+S  EA +YGL+D ++
Sbjct:   28 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP_IDILO (ATP-dependent Clp protease proteolytic subunit OS=Idiomarina loihiensis GN=clpP PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 107/176 (60.80%), Postives = 140/176 (79.55%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + R+I C G V+D MAN+IVAQLL+L++ +P KDI +Y+NSPGG VTAGMAI+DTM+ I+PDVSTVC+G AASMGAFLL+ GA+GKRY LPNSR+MIHQPLGG QG  +D +I A ++L  K  LN  LA +TGQ  EK+ +DTDRD+F+S +E+ DYGL+DG++
Sbjct:   24 ERSYDIYSRLLKERVIFCCGQVEDHMANLIVAQLLFLESDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLAGGAQGKRYCLPNSRVMIHQPLGGFQGQASDFEIHAKQILDLKERLNRMLAENTGQDYEKVARDTDRDHFLSAEESIDYGLVDGIL 199
[Close]
BLAST of CX046969 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNSC (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9605) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.748e-58
Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = -1 
Query:  271 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGAKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDYFMSPKEAKDYGLIDGVI 798
            ER   + S+L + RII  G AV  D AN IVAQ+L+L+A DP KDI +Y+NSPGGSV  G+ IFDTM+HI+PDV TVCVGLAASMGAFLL AG KGKR SL +SRIMIHQPLGGAQG  +DI IQA+E+L  K  LN  L+  TGQ+L++I QDTDRD+FMSP EA +YGLID VI
Sbjct:   13 ERAFDIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMNYGLIDSVI 188
The following BLAST results are available for this feature:
BLAST of CX046969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STAA19.748e-5859.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTY9.748e-5860.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTI9.748e-5860.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALSV9.748e-5860.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALNS9.748e-5860.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALHS9.748e-5860.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALEP9.748e-5860.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALCH9.748e-5860.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_IDILO9.748e-5860.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNSC9.748e-5865.91ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046969 ID=CX046969; Name=CX046969; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTTTTTTTTTTTTGATATATTTCTAAAGTTTTATTTCAGCTTAAAG
TCAAAAACTGACAGCAAAACTCATCTTTCTTCAGTTCTGTATTATACATG
TCAATGTTTCAACAATCAAATGAACTGAAAGGCAATAACAATAAGTATAA
TTTAACTCTACAAATTACCACTTCATTAATTGCAATGATCACATGGGTAG
GTCACACACTGGACTTGTCATTACCATCTGCCGCAGCGGGCAGCGGCTGG
AGTGCTTTAAGAGGATTCATGATAACACCGTCAATAAGCCCATAATCTTT
GGCTTCTTTTGGGCTCATAAAATAATCACGGTCAGTATCCTGGTTGATCT
TCTCAAGACTTTGACCAGTGTGGTAGGCAAGATACCCATTCAGGTTTGCC
TTGTGATGCAGCATTTCATTAGCCTGAATATCTATGTCGGTTTGCCCACC
TTGTGCACCACCAAGAGGCTGATGAATCATTATCCTTGAGTTTGGCAAAC
TGTATCTTTTTCCTTTGGCCCCAGCACTAAGCAGGAAAGCTCCCATACTA
GCTGCTAATCCAACACAAACAGTGGAGACATCAGGTCGAATATGCTTCAT
AGTGTCAAATATGGCCATACCGGCAGTAACTGATCCTCCTGGAGAATTGA
CATAGATAACAATATCCTTGTGAGGATCAATAGCATCAAGATAGAGAAGC
TGAGCTACAATAATGTTCGCCATGTCATCATCAACAGCTCCACCACAGCG
AATTATTCTATGCTGGAAAAGTTGACTGATAACACTCTGAAACCGCTCTT
GCACCATCGGGTTAGCAGGTGGTGGCCCTTGCGCATGTACAGGGAAGTAT
GG
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