CX046962

Overview
NameCX046962
Unique NameCX046962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_ECO5E (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 81/250 (32.40%), Postives = 131/250 (52.40%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +IL +H     A E+
Sbjct:  176 PRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEI 420          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_ECO55 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 81/250 (32.40%), Postives = 131/250 (52.40%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +IL +H     A E+
Sbjct:  176 PRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEI 420          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_ECO45 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 81/250 (32.40%), Postives = 131/250 (52.40%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +IL +H     A E+
Sbjct:  176 PRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEI 420          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_ECO27 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 81/250 (32.40%), Postives = 131/250 (52.40%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +IL +H     A E+
Sbjct:  176 PRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEI 420          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_ECO24 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.242e-28
Identity = 81/250 (32.40%), Postives = 131/250 (52.40%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ +++ GAG IG E  S++  +  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  L+AD +L + GRT  T  L L  IG+ETD  G++ VN  + T  P VYA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +IL +H     A E+
Sbjct:  176 PRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEI 420          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_PHOPR (Soluble pyridine nucleotide transhydrogenase OS=Photobacterium profundum GN=sthA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.824e-28
Identity = 81/250 (32.40%), Postives = 129/250 (51.60%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA-GKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ +++ GAG IG E  S++  LG +V ++     ++  +D EI       L               ++ + D + L LE    G+K  + AD +L + GRT  T  L L+K+G+  D  G++ VN+ + T++  VYA+GDVI  P LA  A + G    + +  G+      D +P  +YT PE++SVGKTE+Q+    V Y VG+  F   +RA+      G +KIL  +ET +IL +H     A E+
Sbjct:  179 PRHIIIYGAGVIGSEYASIFRGLGVKVDLINTRHRLLEFLDNEISDSLSYHLWNSGAMIRNGETFEKIEGTDDSIILHLE---SGKK--MRADCLLYANGRTGNTDKLNLNKVGLTPDSRGQLAVNQNYCTDVDHVYAVGDVIGYPSLASAAYDQGRFVAQAITTGEAQGSLIDHIPTGIYTIPEISSVGKTEQQLTADKVPYEVGRSQFKHLARAQIAGTEVGSLKILFHRETKEILGIHCFGERAAEI 423          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_HAHCH (Soluble pyridine nucleotide transhydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=sthA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.824e-28
Identity = 81/249 (32.53%), Postives = 127/249 (51.00%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ L++ GAG IG E  S++  LG +V ++     ++  +DGEI       L    +      +   V     GV LT++    G++  + AD  L   GRT  T  LGL+ IG+E +  G++ V+  + T IP V+A GDVI  P LA  A + G +    +           VP  +YT PE++SVG+TE ++ E  V Y VG+  F   +RA+   D  G++K+L  +ET ++L +H     A E+
Sbjct:  175 PRTLIIYGAGVIGCEYASIFVGLGVKVDLINPGERLLSFLDGEISDALSYHLRDNGVLVRHNEQYDSVVGDDHGVVLTMK---SGKR--IRADAFLWCNGRTGNTDNLGLENIGLEPNARGQLAVDNHYRTKIPHVFAAGDVIGWPSLASAAYDQGRSASSEIVKDDFFRFITDVPTGIYTIPEISSVGRTEAELTEAKVPYEVGQAFFKDLARAQITGDTVGMLKLLFHRETMELLGIHCFGDQASEI 418          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_ERWCT (Soluble pyridine nucleotide transhydrogenase OS=Erwinia carotovora subsp. atroseptica GN=sthA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.994e-28
Identity = 79/250 (31.60%), Postives = 131/250 (52.40%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+ +++ GAG IG E  S++  L  +V ++     ++  +D E+            +      +   ++   DGV + L+    G+K  ++AD +L + GRT  T  LGL+ IG+ TD  G++ VN  + T +  +YAIGDVI  P LA  A + G +A    + G       + +P  +YT PE++SVGKTE+++  + V Y VG+  F   +RA+ +    G +KIL  +ET +IL +H     A E+
Sbjct:  178 PQHVIIYGAGVIGCEYASIFRGLSVKVDLINTRDRLLAFLDQEMSDALSYHFWNNGVVIRHNEEFDSIEGLSDGVIVNLK---SGKK--MKADCLLYANGRTGNTETLGLENIGLSTDSRGQLKVNSMYQTALAHIYAIGDVIGYPSLASAAYDQGRLAAQAIIKGDASAHLIEDIPTGIYTIPEISSVGKTEQELTAMKVPYEVGRAQFKHLARAQIVGMNVGSLKILFHRETKQILGIHCFGERAAEI 422          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: STHA_ERWT9 (Soluble pyridine nucleotide transhydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=sthA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.113e-27
Identity = 80/250 (32.00%), Postives = 129/250 (51.60%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P  +++ GAG IG E  S++  L  +V ++     ++  +D E+            +      +   V+   DGV + L+    G+K  L+AD +L + GRT  T  L L+ +G+E D  G + VN  + T  P +YA+GDVI  P LA  A + G +A    + G+      + +P  +YT PE++SVGKTE+Q+  + V Y VG+  F   +RA+ +    G +KIL  +ET +IL +H     A E+
Sbjct:  176 PGHVIIYGAGVIGCEYASIFRGLAVKVDLINTRDRLLAFLDQEMSDSLSYHFWNNGVVIRHNEEFEKVEGVADGVIMHLK---SGKK--LKADCLLYANGRTGNTDSLSLENVGLEADGRGLLKVNSMYQTAQPNIYAVGDVIGYPSLASAAYDQGRIAAQAMIKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGSLKILFHRETKEILGIHCFGERAAEI 420          
BLAST of CX046962 vs. ExPASy Swiss-Prot
Match: DLDH_MYCPN (Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoniae GN=pdhD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.113e-27
Identity = 80/251 (31.87%), Postives = 132/251 (52.59%), Query Frame = 2
Query:    2 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKV--PGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILRVHIMAPNAGEL 748
            P+KLVV+G G IG+E   ++A LGSEVT+++    I+   D E+     + L+ + +K +   +V   + +       +  +  G++  +  D +LVS GR P T  L  D + ++ D+  RI +N+   T+IP +Y +GD     MLAH A + G   V  +  K       K+  P  +YT+PEVASVG TE ++K+ G+ Y           +A A ++  G VK++ + +T KIL   I+A  A ++
Sbjct:  171 PRKLVVVGGGVIGIEFAFLYASLGSEVTILQGVDRILEIFDTEVSDLVAKLLQTKNVKIITNAQVTRANNN------EVFYSQNGQEGSVVGDRILVSIGRIPNTECL--DGLNLQRDERNRIVLNQDLQTSIPNIYIVGDANAQLMLAHFAYQQGRYAVNHILNKKQVKPAQKLTCPSCIYTNPEVASVGYTEMELKKQGIPYVKTNLVLAHCGKAIADNETNGFVKMMFDPQTGKILGCCIIAATASDM 413          
The following BLAST results are available for this feature:
BLAST of CX046962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
STHA_ECO5E2.242e-2832.40Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO552.242e-2832.40Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO452.242e-2832.40Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO272.242e-2832.40Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO242.242e-2832.40Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_PHOPR3.824e-2832.40Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
STHA_HAHCH3.824e-2832.53Soluble pyridine nucleotide transhydrogenase OS=Ha... [more]
STHA_ERWCT4.994e-2831.60Soluble pyridine nucleotide transhydrogenase OS=Er... [more]
STHA_ERWT91.113e-2732.00Soluble pyridine nucleotide transhydrogenase OS=Er... [more]
DLDH_MYCPN1.113e-2731.87Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046962 ID=CX046962; Name=CX046962; organism=Citrus sinensis; type=EST; length=749bp
TCCTAAGAAACTCGTGGTCATTGGGGCAGGCTACATTGGGCTGGAGATGG
GCTCAGTTTGGGCCAGGCTTGGTTCAGAGGTCACTGTTGTTGAATTTGCA
GCTGATATCGTCCCAAGCATGGATGGGGAAATTCGCAAGCAATTTCAGCG
TTCACTTGAGAAGCAGAAGATGAAATTCATGCTCAAAACTAAGGTGGTGG
GAGTTGATTTATCTGGTGATGGTGTCAAGTTGACCCTTGAACCAGCAGCT
GGTGGTGAAAAGACCATACTTGAAGCTGATGTTGTTCTTGTGTCTGCTGG
CCGGACTCCATTCACCGCTGGGCTCGGGCTGGATAAGATAGGAGTGGAAA
CCGATAAGATGGGACGGATACCAGTTAATGAGAGATTTGCTACAAACATA
CCTGGTGTTTATGCGATTGGAGACGTAATTCCAGGACCAATGTTAGCTCA
CAAGGCAGAAGAGGATGGGGTTGCTTGTGTTGAATTCTTAGCTGGTAAAC
ATGGCCATGTGGACTATGATAAGGTCCCTGGAGTTGTCTACACACACCCT
GAGGTTGCTTCAGTTGGGAAGACTGAGGAGCAGGTAAAGGAACTTGGTGT
TGAGTACCGTGTGGGGAAATTCCCTTTCTTGGCAAATAGCCGAGCAAAAG
CTATTGATGATGCTGAAGGAATAGTCAAGATTTTGGCTGAGAAAGAGACA
GACAAGATATTGCGGGTTCATATTATGGCACCCAATGCTGGAGAGCTCA
back to top