CX046956

Overview
NameCX046956
Unique NameCX046956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 9.499e-87
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = -3 
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 9.499e-87
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = -3 
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS R R+WYIQ+TCAT G+GLYEGLDWLSN + N+
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 2.116e-86
Identity = 156/179 (87.15%), Postives = 164/179 (91.62%), Query Frame = -3 
Query:  217 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIAN 753
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHS R R+WYIQ+TCAT G+GLYEGLDWLSN + N
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 2.116e-86
Identity = 156/179 (87.15%), Postives = 164/179 (91.62%), Query Frame = -3 
Query:  217 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIAN 753
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RML EDELRDAVLL+FANKQDLPNAMNAAEITDKLGLHS R R+WYIQ+TCAT G+GLYEGLDWLSN + N
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 318.161 bits (814), Expect = 3.610e-86
Identity = 157/181 (86.74%), Postives = 164/181 (90.61%), Query Frame = -3 
Query:  211 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 753
            MG   T L  RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RMLNEDELRDAVLLVFANKQDLPNAMN AEITDKLGLHS R R WYIQ+TCAT G+GLYEGLDWLS  + N++
Sbjct:    1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 316.62 bits (810), Expect = 1.050e-85
Identity = 154/177 (87.01%), Postives = 163/177 (92.09%), Query Frame = -3 
Query:  211 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 741
            F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDRVVEAR+EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGL S RQR WYIQ+TCAT G+GL+EGLDWLS  +  K+
Sbjct:    8 FGKLFDGLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTGDGLFEGLDWLSTELKKKS 184
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 316.62 bits (810), Expect = 1.050e-85
Identity = 156/181 (86.19%), Postives = 164/181 (90.61%), Query Frame = -3 
Query:  211 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 753
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHS R R WYIQ+TCAT G+GLYEGLDWLSN + N++
Sbjct:    1 MGNVFGSLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 2.340e-85
Identity = 156/180 (86.67%), Postives = 163/180 (90.56%), Query Frame = -3 
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 2.340e-85
Identity = 156/180 (86.67%), Postives = 163/180 (90.56%), Query Frame = -3 
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
[Close]
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 315.464 bits (807), Expect = 2.340e-85
Identity = 156/180 (86.67%), Postives = 163/180 (90.56%), Query Frame = -3 
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS R R+WYIQ+TCAT G+GLYEGLDWL+N + NK
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
The following BLAST results are available for this feature:
BLAST of CX046956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF1_HUMAN9.499e-8787.78ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN9.499e-8787.78ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF1_LOCMI2.116e-8687.15ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME2.116e-8687.15ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF_DUGJA3.610e-8686.74ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF_NEUCR1.050e-8587.01ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]
ARF12_CAEBR1.050e-8586.19ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF3_TAKRU2.340e-8586.67ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT2.340e-8586.67ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB2.340e-8586.67ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C03-F6-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046956 ID=CX046956; Name=CX046956; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTTGAGGAAAGATAAACATTCAAGAATTATTCTGAA
GCTACAAGAAACAAATCTCAACGTTTGCAAGGGAAACAACAAACACAGTA
AAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAAGAACACTTGAGATG
TGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACCCAAAACTCAAAATT
TAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAGAGCCAGTCAAGTCCC
TCATACAGCCCTTCACCAAAAGTGGCACATGTGCTCTGGATATACCAGTG
GCGCTGGCGAAAAGAGTGAAGGCCAAGCTTGTCAGTTATCTCAGCAGCAT
TCATTGCATTTGGAAGATCTTGCTTGTTAGCAAATACAAGCAGCACAGCA
TCTCTCAATTCATCCTCATTCAACATTCTGTGCAACTCATCCCTAGCTTC
TACCACACGGTCGCGATCATTACTGTCAACCACAAAGATGAGTCCTTGGG
TGTTTTGGAAATAATGTCTCCACAAAGGTCGGATCTTGTCTTGACCCCCG
ACATCCCAGACAGTAAAGCTGATGTTCTTATACTCAACGGTCTCTACATT
AAATCCAATGGTAGGAATGGTGGTGACGATCTCTCCGAGCTTAAGCTTGT
ACAGGATAGTAGTCTTACCAGCTGCATCGAGACCTACCATGAGAATTCTC
ATCTCTTTCTTAGCAAAAAGCCTGCTGAAAAGCTTGGTGAAAGACAGCCC
CATTTTTCACAACTGAGGAAGAGAGCGGTTTTTGCCTTGGTGCAGATCTA
CTGCCCCTCTCTCTCTCTATAAAA
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