CX046956

Overview
NameCX046956
Unique NameCX046956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 1.167e-68
Identity = 121/170 (71.18%), Postives = 144/170 (84.71%), Query Frame = -3
Query:  226 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNN 735
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL   R R+WY+Q +CAT G+GL EGL WL++N
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSN 172          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 1.092e-66
Identity = 120/180 (66.67%), Postives = 146/180 (81.11%), Query Frame = -3
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F+++  R   K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHS  +R W IQ T A  G+GLYEGL+WLS  I NK
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.022e-64
Identity = 119/172 (69.19%), Postives = 139/172 (80.81%), Query Frame = -3
Query:  226 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNN 741
            F+K FSRLF+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF  T+GLIFVVDS D +R+ EAR ELHR++++ E+RD +LLV ANKQDLP A++ A+ITD L L   + R W +Q TCA  G+GL EGL WLS N
Sbjct:    9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQN 180          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.783e-62
Identity = 110/177 (62.15%), Postives = 140/177 (79.10%), Query Frame = -3
Query:  223 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 753
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH  + R W I  TCA  GEGL+EGLDWLSN +
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 8.098e-62
Identity = 109/177 (61.58%), Postives = 140/177 (79.10%), Query Frame = -3
Query:  223 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNI 753
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH  + R W I  TCA  GEGL+EGLDWLSN +
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.579e-60
Identity = 104/176 (59.09%), Postives = 138/176 (78.41%), Query Frame = -3
Query:  214 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 741
            F+ +FS    KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S + R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.005e-57
Identity = 100/176 (56.82%), Postives = 134/176 (76.14%), Query Frame = -3
Query:  214 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 741
            F+ +FS    KK+ RILM+GLD AGK+T+L+KLKLG++V TIPTIGFNVET+ YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S + R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   13 FSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.843e-57
Identity = 101/177 (57.06%), Postives = 136/177 (76.84%), Query Frame = -3
Query:  214 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFG-EGLYEGLDWLSNNIANK 741
            F+ +FS    KK+ RILM+GLD AGK+T+LYKLKLG+IV+T+PTIGFNVET+EYKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L ++EL+   +L+FANKQD+ NAMN +EI D L L+S + R WY+Q   A     G+YEG DW++N++ NK
Sbjct:   13 FSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLNNK 189          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.252e-54
Identity = 102/180 (56.67%), Postives = 134/180 (74.44%), Query Frame = -3
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM ++E+ + LGL + + R W I  T AT G GL E ++WL   + ++
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CX046956 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.136e-54
Identity = 102/180 (56.67%), Postives = 133/180 (73.89%), Query Frame = -3
Query:  214 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 753
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL + + R W I  T AT G GL E ++WL   + ++
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
The following BLAST results are available for this feature:
BLAST of CX046956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF3_DROME1.167e-6871.18ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH1.092e-6666.67Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF2_SCHPO1.022e-6469.19Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF3_ARATH2.783e-6262.15ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP8.098e-6261.58ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARFJ_DICDI7.579e-6059.09ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARFK_DICDI6.005e-5756.82ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARFH_DICDI7.843e-5757.06ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARL1_HUMAN1.252e-5456.67ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN2.136e-5456.67ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C03-F6-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046956 ID=CX046956; Name=CX046956; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTTTTGAGGAAAGATAAACATTCAAGAATTATTCTGAA
GCTACAAGAAACAAATCTCAACGTTTGCAAGGGAAACAACAAACACAGTA
AAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAAGAACACTTGAGATG
TGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACCCAAAACTCAAAATT
TAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAGAGCCAGTCAAGTCCC
TCATACAGCCCTTCACCAAAAGTGGCACATGTGCTCTGGATATACCAGTG
GCGCTGGCGAAAAGAGTGAAGGCCAAGCTTGTCAGTTATCTCAGCAGCAT
TCATTGCATTTGGAAGATCTTGCTTGTTAGCAAATACAAGCAGCACAGCA
TCTCTCAATTCATCCTCATTCAACATTCTGTGCAACTCATCCCTAGCTTC
TACCACACGGTCGCGATCATTACTGTCAACCACAAAGATGAGTCCTTGGG
TGTTTTGGAAATAATGTCTCCACAAAGGTCGGATCTTGTCTTGACCCCCG
ACATCCCAGACAGTAAAGCTGATGTTCTTATACTCAACGGTCTCTACATT
AAATCCAATGGTAGGAATGGTGGTGACGATCTCTCCGAGCTTAAGCTTGT
ACAGGATAGTAGTCTTACCAGCTGCATCGAGACCTACCATGAGAATTCTC
ATCTCTTTCTTAGCAAAAAGCCTGCTGAAAAGCTTGGTGAAAGACAGCCC
CATTTTTCACAACTGAGGAAGAGAGCGGTTTTTGCCTTGGTGCAGATCTA
CTGCCCCTCTCTCTCTCTATAAAA
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