CX046909

Overview
NameCX046909
Unique NameCX046909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_ACTSZ (30S ribosomal protein S11 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:   89 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 418
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEMVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
The following BLAST results are available for this feature:
BLAST of CX046909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS11_ACTSZ8.123e-1136.3630S ribosomal protein S11 OS=Actinobacillus succin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A01-B2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046909 ID=CX046909; Name=CX046909; organism=Citrus sinensis; type=EST; length=803bp
GTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAA
ATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGGCGTT
GCCCACATTTTTGCATCGTTTAATGACACTTTCATTCATGTGACTGACTT
GTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAG
CTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGAT
GTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCT
CCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGT
CAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAG
GATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAGAAG
GGGTAGAAGGTTGTAATTCTTTTCCTCATACCCATCCATAACGTTCAAGA
TGATGCCGTGGTTGCCGAGAGTTTCACTCTCTTCTGTTAGATGCAAGACT
TATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCTTTGT
GTTAGCCTTTCCGATCAATTAAGTTTATACAGTGGCAAGACTAATCATTT
CTCCATGAGTTTCTGAATTTTATTGTTTATCTACATTTACAAGTATTGTG
TTAAGTGGTAAAGTATGATGGTAGTGGTTATGATTAGATGTTGATCAATT
CGCCCCTTTTTATATCCCTTTTTATATTTAATCTACCTTTTTCATTGCCA
AAA
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