CX046909

Overview
NameCX046909
Unique NameCX046909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_THESM (30S ribosomal protein S11P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps11p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.411e-31
Identity = 65/113 (57.52%), Postives = 86/113 (76.11%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430
            +GVAHI+AS+N+T IH+TDL+G ET+ + +GGM VKADRDESSPYAAM+AA+  ++   E GI  +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   16 WGVAHIYASYNNTIIHITDLTGAETISKWSGGMVVKADRDESSPYAAMIAARRAAEEAMEKGINGVHIKVRAPGGSKSKNPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 128          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRKO (30S ribosomal protein S11P OS=Pyrococcus kodakaraensis GN=rps11p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.205e-30
Identity = 64/113 (56.64%), Postives = 86/113 (76.11%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  ++   E GIT +HIK+RA            AQ+A+RAL+R+G++IGR+EDVTPIP D T
Sbjct:   17 WGVAHIYSSYNNTIIHITDLTGAETISRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGITGVHIKVRAPGGSKSKSPGPGAQAAIRALSRAGLRIGRVEDVTPIPHDGT 129          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRFU (30S ribosomal protein S11P OS=Pyrococcus furiosus GN=rps11p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.574e-30
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430
            +G+AHI++SFN+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_METMJ (30S ribosomal protein S11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.574e-30
Identity = 67/115 (58.26%), Postives = 85/115 (73.91%), Query Frame = 2
Query:   83 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427
            E  +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A  V+Q  ++ GIT +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:    3 EEKWGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAIQVAQNARDKGITGVHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 117          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRHO (30S ribosomal protein S11P OS=Pyrococcus horikoshii GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.507e-30
Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRAB (30S ribosomal protein S11P OS=Pyrococcus abyssi GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.507e-30
Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_METKA (30S ribosomal protein S11P OS=Methanopyrus kandleri GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.507e-30
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430
            +G+AHI+ASFN+T I +TDL+G ET  R +GGM V ADR+ESSPYAAM AA+  ++   E GITA+H+K+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   14 WGIAHIYASFNNTIITITDLTGAETFARWSGGMVVDADREESSPYAAMKAARRAAEEAMEKGITAVHVKVRAPGGHGPKTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 126          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_METHJ (30S ribosomal protein S11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps11p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.983e-30
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 2
Query:   77 DGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427
            +G+  +GVAHI+ASFN+T I VTDL+G ET+ + +GGM VK DR+ESSPYAAM  A +V+Q  +E GI  LH+K+RA            AQ+A+RALAR+GM+IG IEDVTP+P DS
Sbjct:    3 EGKEKWGVAHIYASFNNTIITVTDLTGAETITKSSGGMVVKQDRNESSPYAAMQMAGNVAQAAREKGIVGLHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGLIEDVTPVPHDS 119          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_IGNH4 (30S ribosomal protein S11P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps11p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.983e-30
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427
            +GVAHIF+S N+TF+H+TD++G ET  R+TGGM VKAD ++ SPYAAM+AA   +Q+  E GITA+HIK+RA            AQ+A+RALARSG  IGRIEDVTP+P D+
Sbjct:    7 WGVAHIFSSPNNTFVHITDITGSETASRVTGGMVVKADHEKPSPYAAMIAAARAAQQAMERGITAIHIKVRAPGGYGPKTPGPGAQAAIRALARSGFIIGRIEDVTPLPHDT 118          
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_HYPBU (30S ribosomal protein S11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps11p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.983e-30
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAMLAA   +Q+  + GI ALHIK+RA            AQ+A+RALAR+G  IGRIEDVTP+P D+T
Sbjct:   10 WGVAHIYSSYNNTIIHITDLTGAETVARTSGGMVVKADREKPSPYAAMLAASRAAQQAMDRGIMALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPLPHDTT 122          
The following BLAST results are available for this feature:
BLAST of CX046909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS11_THESM5.411e-3157.5230S ribosomal protein S11P OS=Thermococcus sibiric... [more]
RS11_PYRKO1.205e-3056.6430S ribosomal protein S11P OS=Pyrococcus kodakarae... [more]
RS11_PYRFU1.574e-3056.6430S ribosomal protein S11P OS=Pyrococcus furiosus ... [more]
RS11_METMJ1.574e-3058.2630S ribosomal protein S11P OS=Methanoculleus maris... [more]
RS11_PYRHO3.507e-3055.7530S ribosomal protein S11P OS=Pyrococcus horikoshi... [more]
RS11_PYRAB3.507e-3055.7530S ribosomal protein S11P OS=Pyrococcus abyssi GN... [more]
RS11_METKA3.507e-3058.4130S ribosomal protein S11P OS=Methanopyrus kandler... [more]
RS11_METHJ5.983e-3056.4130S ribosomal protein S11P OS=Methanospirillum hun... [more]
RS11_IGNH45.983e-3058.0430S ribosomal protein S11P OS=Ignicoccus hospitali... [more]
RS11_HYPBU5.983e-3057.5230S ribosomal protein S11P OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11A01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A01-B2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046909 ID=CX046909; Name=CX046909; organism=Citrus sinensis; type=EST; length=803bp
GTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAA
ATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGGCGTT
GCCCACATTTTTGCATCGTTTAATGACACTTTCATTCATGTGACTGACTT
GTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAG
CTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGAT
GTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCT
CCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGT
CAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAG
GATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAGAAG
GGGTAGAAGGTTGTAATTCTTTTCCTCATACCCATCCATAACGTTCAAGA
TGATGCCGTGGTTGCCGAGAGTTTCACTCTCTTCTGTTAGATGCAAGACT
TATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCTTTGT
GTTAGCCTTTCCGATCAATTAAGTTTATACAGTGGCAAGACTAATCATTT
CTCCATGAGTTTCTGAATTTTATTGTTTATCTACATTTACAAGTATTGTG
TTAAGTGGTAAAGTATGATGGTAGTGGTTATGATTAGATGTTGATCAATT
CGCCCCTTTTTATATCCCTTTTTATATTTAATCTACCTTTTTCATTGCCA
AAA
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