CX046909
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.291e-24 Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430 +G+AH+ ASFN+T + VTD +G ETL + +GG VK +RDE+SPYAAM A+ +++ + GI +H+++R AQ+A+RALAR+G++IGRIEDVTPIP D T Sbjct: 7 WGIAHVHASFNNTIMTVTDQTGAETLAKSSGGSVVKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPHDGT 119
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_METS3 (30S ribosomal protein S11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps11p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.202e-24 Identity = 54/113 (47.79%), Postives = 80/113 (70.80%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430 +G+A+I++S+N+T I VTD++G ET+ + +GG V+ADR ++SP+AAM AA ++ KE G LHI++RA AQ+ +RALAR+G+KIG+IED+TPIP D T Sbjct: 7 WGIANIYSSYNNTIITVTDITGAETISQWSGGKVVRADRQQASPFAAMAAATRIADDAKEKGFVGLHIRVRAPGGNGHRSPGPGAQATIRALARAGIKIGKIEDITPIPHDGT 119
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRCJ (30S ribosomal protein S11P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps11p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.756e-24 Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427 +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA +Q GI A+HIK+R A +A+RALARSG+ IGRIEDVTPIP D+ Sbjct: 18 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDT 129
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.905e-24 Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427 +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA +Q GI A+HIK+R A +A+RALARSG+ IGRIEDVTPIP D+ Sbjct: 16 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDT 127
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_METS5 (30S ribosomal protein S11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps11p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.905e-24 Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427 +G+A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA + + G+ A+HIK+RA AQ A+R+LARSG IGRIEDVTPIP D+ Sbjct: 9 WGLARIYASQNNTIITITDITGAEVISKASGGMMVKADREKPSPYAAMLAANKAASDALDKGLMAIHIKVRAPGGAGPKTPGPGAQPAIRSLARSGFIIGRIEDVTPIPHDT 120
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_HALMA (30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3) HSP 1 Score: 111.309 bits (277), Expect = 6.407e-24 Identity = 53/116 (45.69%), Postives = 79/116 (68.10%), Query Frame = 2 Query: 83 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 430 E ++G+AH+ ASFN+T I +TD +G ETL + +GG VK +RDE+SPYAAM A+ V+++ + G+ + +++R AQ+ +RALAR+G++IGRIEDVTP P D T Sbjct: 6 EDIWGIAHVHASFNNTIITITDQTGAETLAKSSGGTVVKQNRDEASPYAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSPGPGAQATIRALARAGLEIGRIEDVTPTPHDGT 121
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_THEPD (30S ribosomal protein S11P OS=Thermofilum pendens (strain Hrk 5) GN=rps11p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23 Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 2 Query: 2 SSVAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427 S A RR+TRE + G+A I+AS+N+T IH+TDLSG ET+ +GGM KADRD+ SP+AAM AA ++ + GI +H+K++A A A+RAL R+G+ + RIEDVTP+PTDS Sbjct: 15 SGKAEERRETREKQVRGDV------------GIAWIYASYNNTIIHITDLSGAETIAFASGGMVAKADRDKPSPWAAMQAAARAAKIALDKGIRVVHVKIKAPGGYGPKTPGPGAGPAIRALVRAGLMVDRIEDVTPLPTDS 144
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.427e-23 Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 424 +G+A I++S N+T I +TDL+G ET+ R++GG V+AD+D+ SP+AAM AA +Q GI A+HIK+R A +A+RALARSG+ IGRIEDVTPIP D Sbjct: 15 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 125
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_SULAC (30S ribosomal protein S11P OS=Sulfolobus acidocaldarius GN=rps11p PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23 Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 427 +G A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA + + GI+A+HIK+RA AQ A+RALAR+G IGRIEDVTP+P D+ Sbjct: 9 WGNARIYASQNNTIITITDITGAEIISKASGGMVVKADREKPSPYAAMLAANKAANDAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPLPHDT 120
BLAST of CX046909 vs. ExPASy Swiss-Prot
Match: RS11_PYRAE (30S ribosomal protein S11P OS=Pyrobaculum aerophilum GN=rps11p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23 Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2 Query: 92 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 424 +G+A I++S N+T I +TDL+G ET+ R++GG V+AD+D+ SP+AAM AA +Q GI A+HIK+R A +A+RALARSG+ IGRIEDVTPIP D Sbjct: 10 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 120 The following BLAST results are available for this feature:
BLAST of CX046909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 211
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046909 ID=CX046909; Name=CX046909; organism=Citrus sinensis; type=EST; length=803bpback to top |