CX046905

Overview
NameCX046905
Unique NameCX046905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046905 vs. ExPASy Swiss-Prot
Match: EIF3E_USTMA (Eukaryotic translation initiation factor 3 subunit E OS=Ustilago maydis GN=INT6 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.770e-49
Identity = 101/280 (36.07%), Postives = 157/280 (56.07%), Query Frame = 2
Query:   53 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD-----PKSFTSPLNQ--------------MQSRIWLMHWSLFIFFNHDNGRTLIIDLXHQDKYLNAIQTNAPHLLRYLATAFIVNK 835
            YDLTQ + P LDRHL  PLL  L    ++ +  I K++ EL   T+MVDYA+ +++  Y  +  P ++ ++R   +A    L      ++  +Q+P+    L+  D+  NLQ L ++Y +  +QI ALY+Y  FQF CGNY  A+ YLY +R L T+    +S+ WGK+A++IL+  W+ AL EL  L+E++D        S+  P                 ++ R WL+HW+LFIFFNH  GR  ++++     YLN IQT    LLRY+  A ++++
Sbjct:    5 YDLTQTLLPYLDRHLGLPLLSHLAGSGIFSETDIAKAQYELAKNTSMVDYALQLYEQAYPNQPAPAEIEKQRENAIALNDKLGSEVDHVLEVIQDPSVASALK-QDKAQNLQWLEEKYNLTSEQINALYRYGYFQFSCGNYGDASSYLYHFRVLSTDPVLTMSSHWGKLASDILVGEWEQALSELKLLREQLDSSAAHVTASYAQPSTSNGSSQNDDLTQEGLLKKRAWLLHWALFIFFNHPGGREQLVEMFLSPVYLNTIQTTCWWLLRYVVAALLLSR 283          
BLAST of CX046905 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEEL (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis elegans GN=eif-3.E PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.985e-47
Identity = 99/271 (36.53%), Postives = 169/271 (62.36%), Query Frame = 2
Query:   44 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYN-----LQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDL-XHQDKYLNAIQTNAPHLLRYLATAFIVNK 835
            M+T+DLTQR+AP LD HL+ PLLEF++ R +Y ++ + +   +LL KTNM+D  ++     Y+ + +P  +  ++ +++     L+ +   +V+ L+ P   +++  N++  +     L+ L   +    D ++ L++Y+KF +ECGNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  + D   F +    +  R WLMHW+LF+++N+  GR  II++  +Q  YLNAIQ  APHLLRYLA A + +K
Sbjct:    1 MSTFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIE----TYNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIP-EVKEMMDNNRERDGNVRILEHLTQNHNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYI-DANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSK 265          
BLAST of CX046905 vs. ExPASy Swiss-Prot
Match: EIF3E_MONBE (Eukaryotic translation initiation factor 3 subunit E OS=Monosiga brevicollis GN=13685 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.070e-40
Identity = 90/265 (33.96%), Postives = 149/265 (56.23%), Query Frame = 2
Query:   44 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDL-XHQDKYLNAIQTNAPHLLRYLATAFIVNK 835
            MA +DLTQ I  NLD HL+ PLL+   +  +Y +  + ++K+++L++T +++ A+++  +   TE   +D+  R   +    K  E++  P+    +N      + A     +L    + Y    +  + LY  +KF F+ G Y  A   LY YRA+ T+ + + +ALWGK+AA IL  NW  A E++  L E +D  K+  + + Q+Q R WL+HWSLF+FFN  +G   I+DL  +++   NA+QT APHL RY     I+++
Sbjct:    1 MAAHDLTQAICQNLDPHLILPLLDHCVDLDIYNEADLKRAKMQVLSRTRLIEQALELADA---TEK--KDLDARMRSISEEEKTWEKQLEPVFEMFENDEVLSIIEATKNKDSLLSELEPYGFTENTADLLYHGSKFYFDRGQYDLAHGLLYNYRAVSTDDKLKFTALWGKLAAAILSGNWQTAQEDMYLLLEYIDGGKNELTAVEQLQQRNWLLHWSLFVFFNQPDGPDGIVDLFMNKETCTNAMQTIAPHLFRYATAVAIMSR 260          
BLAST of CX046905 vs. ExPASy Swiss-Prot
Match: EIF3E_DICDI (Eukaryotic translation initiation factor 3 subunit E OS=Dictyostelium discoideum GN=eif3e PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.149e-37
Identity = 90/308 (29.22%), Postives = 165/308 (53.57%), Query Frame = 2
Query:   53 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFL----QNPNSFQDLRANDQHYNLQMLNDRY----------------------------------------QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT---NSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLXHQDKYLNAIQTNAPHLLRYLATAFIVNK 835
            YDLT++I   LD H++ PL+ +L++ Q Y + +I K+  ++L++T   DYA++ ++S+   +  P  +  ++ E+V  L  L+E+ + +  ++    Q     ++L+   +    +   D+                                         +I P+ ++++Y+++K  FE G Y  A ++L  +  L     N ++RLSALWG + ++IL  NW  A+ +++ L++++D   S  +P+ Q+  R WL+H +LF++F +   R+ ++DL  +DKYLNAIQT  PH+LRYLA A IVNK
Sbjct:    3 YDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMADILSQTGCCDYAINAYESIGR-DTAP--LQAKKQELVGELNKLKEQCSFVTQYIESKKQQKEQQKELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLEKITPEILDSIYRFSKLLFEIGQYGSAREHLEIFLQLSPTHQNKDKRLSALWGILESDILSLNWGQAVGDISPLQDQID---SNGTPVEQLGQRAWLIHRALFVYFYNPESRSSLVDLLLEDKYLNAIQTTCPHILRYLAVAIIVNK 304          
BLAST of CX046905 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEBR (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis briggsae GN=eif-3.E PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.431e-29
Identity = 63/141 (44.68%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  419 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDL-XHQDKYLNAIQTNAPHLLRYLATAFIVNK 835
            D ++ L++Y+KF +ECGNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  + D   F +    +  R WLMHW+LF+++N+  GR  II++  +Q  YLNAIQ  APHLLRYLA A + +K
Sbjct:    5 DMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYI-DANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSK 144          
The following BLAST results are available for this feature:
BLAST of CX046905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_USTMA2.770e-4936.07Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEEL1.985e-4736.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MONBE3.070e-4033.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DICDI4.149e-3729.22Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEBR5.431e-2944.68Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H10-P19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046905 ID=CX046905; Name=CX046905; organism=Citrus sinensis; type=EST; length=835bp
AGCAGACGCCGCTGCCGCCGAGGAACGAAATTTCAACGCGACAATGGCGA
CGTACGATTTGACACAGAGAATCGCGCCGAATCTGGACCGGCATCTGGTG
TTTCCGCTGCTGGAGTTTCTCCAAGAGCGGCAGATGTACCCGGACGAGCA
GATTCTGAAATCGAAGATAGAGCTCTTGAACAAGACGAACATGGTCGACT
ACGCGATGGACATCCACAAGAGCCTCTACCACACCGAAGACGTCCCGCAG
GATATGGTCGAGCGGAGGGTCGAGGTCGTCGCTCGTTTGAAGGCCCTGGA
GGAGCGCGCCGCCCCGATCGTTTCGTTCTTGCAGAACCCTAACTCCTTTC
AAGATTTGAGAGCTAATGACCAGCACTACAATTTGCAGATGCTTAACGAC
CGTTACCAGATTGGCCCGGATCAGATCGAGGCGCTTTATCAGTATGCCAA
ATTTCAGTTTGAATGTGGGAACTACTCTGGGGCTGCTGACTATCTGTACC
AGTACAGGGCCTTGTGCACAAACAGTGAAAGGAGGCTGAGTGCATTATGG
GGAAAAATGGCGGCTGAGATATTGATGCAGAATTGGGATATTGCTCTTGA
AGAACTTAATCAATTAAAGGAAAAAGTTGATGACCCAAAGAGTTTCACTT
CACCTTTAAATCAGATGCAGAGTAGGATATGGCTAATGCATTGGAGTCTC
TTCATCTTTTTCAATCATGATAATGGAAGAACACTGATCATTGACTTGTT
NCATCAGGATAAGTATCTAAATGCCATTCAAACCAATGCTCCCCATCTTT
TACGCTATTTAGCTACTGCATTCATTGTCAACAAA
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