CX046903

Overview
NameCX046903
Unique NameCX046903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 2.076e-64
Identity = 108/147 (73.47%), Postives = 128/147 (87.07%), Query Frame = 3
Query:  339 EMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            E++ + +  RR LG  SCGTGNPIDDCWRCD  W KNR+RLADC IGFG++AIGGRDG+ YVVTD  D D VNPKPGTLRHAVIQD+PLWI+F RDMVI+LK+ELI+NSFKTIDGRGA+VHIA G CIT+Q+VTN+IIHG+++HDCK
Sbjct:   39 EVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCK 185          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.260e-61
Identity = 101/142 (71.13%), Postives = 122/142 (85.92%), Query Frame = 3
Query:  357 STERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            +  RR L Y SC TGNPIDDCWRCD NW  NR+RLADC IGFG+NAIGGR GR YVVTDP +DDPVNP+PGTLR+AV Q++PLWI+FKRDMVI+LK+ELI+ SFKTIDGRG++VHI +G C+ I + TN+IIHG+++HDCKP
Sbjct:   46 NASRRSLAYLSCRTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKP 187          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.126e-55
Identity = 97/162 (59.88%), Postives = 122/162 (75.31%), Query Frame = 3
Query:  312 NPDEIASMVEMSTRNSTERRKL-------GYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDC 776
            +P+ +A  V+     S  RR+        G   C TGNPIDDCW+CD NW  NR+ LADCGIGFG+ A+GG+ G+FY VTD  DDD VNPKPGTLR+ VIQ++PLWIVF  +M+I+LKQELI NS+KT+DGRGANVHI  GGCIT+Q+V+N+IIH +H+H C
Sbjct:   37 DPELVAYQVQWKVNASITRRQALDTTDQAGSTPCITGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSSDDDAVNPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHC 198          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.323e-54
Identity = 99/168 (58.93%), Postives = 124/168 (73.81%), Query Frame = 3
Query:  276 VVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            ++A  L   ++ +P+ +   V  S   S  RR LGY SCG+GNPID          K     + C IGFG+NAIGG++GR YVVTD  +DDPVNPKPGTLRHAVIQD+PLWI+FKRDMVIQLKQEL++NS+KTIDGRGA+VHI+ G CITI   +N+IIHG+++HDCK
Sbjct:   12 LLAPLLVISSIQDPELVVQDVHRSINASLTRRNLGYLSCGSGNPIDRLLAMQPQLGKKSPAFSYCAIGFGKNAIGGKNGRIYVVTDSGNDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVIQLKQELVMNSYKTIDGRGASVHISGGPCITIHHTSNIIIHGINIHDCK 179          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.396e-52
Identity = 95/175 (54.29%), Postives = 123/175 (70.29%), Query Frame = 3
Query:  300 HAVDNPDEIASMVEMSTRNSTERRKLGY-------------FSCGTGNPIDDCWRC-DGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            H   +PD +A  V  S   S  RR+L                SC TGNPIDDCWRC D +W  NR+RLADC IGFG   +GG++G+ YVVTD  D++P NP PGTLR+ VIQ++PLWIVF  +M+I+LKQELI+NS+KT+DGRG+ VHI   GC+T+Q+V ++IIH LH++DCKP
Sbjct:   32 HQHPSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSSSSCRTGNPIDDCWRCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKP 206          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.801e-50
Identity = 94/161 (58.39%), Postives = 115/161 (71.43%), Query Frame = 3
Query:  303 AVDNPDEIASMVEMSTRNSTERRKLGYFSCGT-GNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            A+  P  +  +    T NST        SC   GNPID+CWRCD NW  NRK LADC +GFGR++IGGR G FY VTD  DD+P+NP PGTLR+A  QD+PLWI+F RDMVIQLKQ+L V S+KTIDGRG NV IA G C+T+  V+N+II+ L++HDC P
Sbjct:   21 AIPKPPIVRRLSTTVTSNSTAS------SCSANGNPIDECWRCDENWKDNRKNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVP 175          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.965e-50
Identity = 105/216 (48.61%), Postives = 136/216 (62.96%), Query Frame = 3
Query:  138 ICLCFAVVLMLFVSVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFS----CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHD 773
            +C+ FA ++    S++A + +  +V   R  +A+    +      E V  A ++   D   E+  +    T N++ RR LG       C   NPID CWRCD NW  NRK+LADC +GFG  AIGG+DG FYVVTD   DD  +PKPGTLRHAVIQ +PLWI+FKR M I+L QE+I+ S KTID RG NVHI  G  IT+Q++ NVIIHGLH+HD
Sbjct:   13 LCITFATIIP---SLMAHIGHYDEVWRRRAEEAKEYARNIYEPHPENVTLAFNQKLRDTMKELKKV--KGTHNNSTRRGLGTKKYTGPCMVTNPIDKCWRCDPNWADNRKKLADCAMGFGSKAIGGKDGEFYVVTD-NSDDYNDPKPGTLRHAVIQKEPLWIIFKRGMNIRLHQEMIMQSDKTIDARGVNVHITKGAGITLQYIKNVIIHGLHIHD 222          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.138e-47
Identity = 99/182 (54.40%), Postives = 117/182 (64.29%), Query Frame = 3
Query:  267 KAEVVAEALSKHA-VDNPDEI---------ASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            K   VA+A +K A   +P+E+         +S    STR +    KLG   C   NPID CWRC  NW  NRK L  C  GFGR   GG  G  YVVTDP DD   +PK GTLR  VIQD+PLWI+F + MVI+LKQELI+N+ KTIDGRGANV IA G  +T+QFV NVIIHG+H+HD KP
Sbjct:   33 KKSKVAQAKAKKAYTPHPEEVTNHFNKAVHSSFEGNSTRRNLRTNKLG--QCLATNPIDRCWRCKKNWSANRKDLVKCVKGFGRKTTGGAAGEIYVVTDPSDDSLTDPKFGTLRWGVIQDRPLWIIFGKSMVIRLKQELIINNDKTIDGRGANVQIAGGAQLTVQFVHNVIIHGIHIHDIKP 212          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL19_ARATH (Putative pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.495e-46
Identity = 95/179 (53.07%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  249 NSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFS-----CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVH 770
            NST     E   +A  +       E+      STR S   +  G +S     C   NPID CWRC  +W K RK+L  C  GFG    GG+ GR YVVT   D+D VNPKPGTLRHAVIQ +PLWI+FK DM I+L QEL++NS KTID RGANVH+A+G  IT+QFV NVIIHGLH+H
Sbjct:   66 NSTDVTTPEEDGDAKPEEEEKEFIEMLGSSTNSTRRSLRGKGKGKWSKLKGPCTASNPIDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRGRIYVVTSNLDEDMVNPKPGTLRHAVIQKEPLWIIFKNDMSIRLNQELLINSHKTIDARGANVHVAHGAGITMQFVKNVIIHGLHIH 244          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.550e-46
Identity = 85/127 (66.93%), Postives = 102/127 (80.31%), Query Frame = 3
Query:  402 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            NPID CWR +  W  NR+ LADC +GFG++A+GG+ G  YVVT+P  DDP NP+PGTLR+AVIQ KPLWI F RDMVI L+ ELI+NS+KTIDGRGA V IA G CITIQ V++VIIHG+ +HDCKP
Sbjct:   37 NPIDSCWRRNPYWASNRRALADCAVGFGKSAVGGKYGSIYVVTNP-SDDPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKP 162          
The following BLAST results are available for this feature:
BLAST of CX046903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL5_ARATH2.076e-6473.47Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL11_ARATH1.260e-6171.13Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH5.126e-5559.88Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL18_SOLLC3.323e-5458.93Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL13_ARATH1.396e-5254.29Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL21_ARATH3.801e-5058.39Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL59_SOLLC4.965e-5048.61Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL_LILLO5.138e-4754.40Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL19_ARATH1.495e-4653.07Putative pectate lyase 19 OS=Arabidopsis thaliana ... [more]
PEL2_ARATH2.550e-4666.93Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H09-P17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046903 ID=CX046903; Name=CX046903; organism=Citrus sinensis; type=EST; length=782bp
CACATTCTTCTCTCTCTCTCTTTCCTTCTCTGCTGCTTTTTCTTTCTTCC
TTTCTTTTTTTTCTCGGTTGTGTTTGGGAAGTGGGAAAGAGAGAGAAAAT
CAAAGAAAACAACGCAATGGCGGTGACGCAGCGTGGCATTTGTCTCTGTT
TTGCTGTCGTTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAAC
GAGCAAGACGTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAA
CTCAACAATGGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAAC
ATGCAGTTGATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACC
CGCAACAGCACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGG
TAATCCCATTGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACC
GCAAGCGTCTTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGT
GGCCGTGATGGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCC
TGTTAACCCCAAACCTGGAACTTTACGCCATGCTGTTATCCAGGATAAGC
CTCTCTGGATTGTTTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAA
CTGATTGTCAATAGCTTCAAGACCATTGATGGTCGTGGGGCGAATGTGCA
CATTGCTAATGGAGGTTGCATCACTATCCAATTTGTGACCAATGTGATCA
TTCACGGTCTTCACGTTCATGACTGTAAACCC
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