CX046903

Overview
NameCX046903
Unique NameCX046903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.690e-46
Identity = 94/170 (55.29%), Postives = 114/170 (67.06%), Query Frame = 3
Query:  285 EALSKHAVDNPDEIASMVEMSTRNSTERRK---LGYFS-----CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVH 770
            +A++    D  + I+S    + R+ T R K    G +S     C   NPID CWRC  +W + RK+L  C  GFG    GG+ GR YVVT PRDDD VNP+PGTLRHAVIQ +PLWIVFK DM I+L QEL++ S KTID RGANVHIA G  IT+Q+V N+IIHGLHVH
Sbjct:   78 KAVASEEEDVIEMISSPTNSTRRSLTGRGKGKGKGKWSKLTGPCTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNIIIHGLHVH 247          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.317e-44
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = 3
Query:  390 CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            C   NPID+CWRCD NW  NRK+LADC +GFGR   GG+DG  YVV D  D+D +NPKPGTLRHAV +D PLWI+F R M+I+L+QEL++ S KTIDGRGA V+I  G  +T+QFV NVIIH ++V    P
Sbjct:  101 CLAYNPIDNCWRCDRNWANNRKKLADCVLGFGRRTTGGKDGPIYVVKDASDNDLINPKPGTLRHAVTRDGPLWIIFARSMIIKLQQELMITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYVKHIVP 231          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.639e-43
Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 3
Query:  402 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            NP+D CWR   +W  NRK LADC +GFG + +GG+ G  YVVT+P D+   NP+PG+LR+ VIQ KPLWI F +DMVI L+ EL+VNS+KTIDGRGA V IA G CITIQ VTNVI+HG+ +HDCKP
Sbjct:   47 NPVDSCWRLKSDWAANRKDLADCVVGFGSSTLGGKKGNLYVVTNPYDNAQ-NPQPGSLRYGVIQAKPLWITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKP 172          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.878e-43
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  324 IASMVEMSTRNSTERRKLGYFS----CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            + +   ++T  +  RR+L        C   N ID CWRCD NW +NR+++ADC +GFG NAIGG+ GR YVVTD  DDD V+PKPGTLR+ VIQ +PLWI+F ++M I+L +ELIV S KTIDGRG NVHI NG  I IQ  +N+II  L +H+  P
Sbjct:   16 LLTFAALTTATNIPRRQLSNKKYKGPCRAENAIDKCWRCDPNWAENRQKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVP 172          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 76/126 (60.32%), Postives = 97/126 (76.98%), Query Frame = 3
Query:  402 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            N ID CWR D NW KNRK+LADC +GFGR   GG++G  YVVTDP D+D + PKPGT+RHAV +D+PLWI+F R M+I+L+QELI+ + KTIDGRGA ++I  G  +T+QFV NVIIH +H+   K
Sbjct:  101 NAIDKCWRGDKNWDKNRKKLADCVLGFGRKTTGGKNGPIYVVTDPSDNDLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHIKQIK 226          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.003e-42
Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 3
Query:  402 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            NP+D CWR   +W  NR+ LADC +GFG + +GG+ G  YVVT+P D+   NP PG+LR+ VIQ KPLWI F +DMVI L  EL+VNS+KTIDGRGA V IA G CITIQ VTNVI+HG+ +HDCKP
Sbjct:   47 NPVDSCWRLKSDWDVNREDLADCAVGFGSSTLGGKKGNIYVVTNPYDNAQ-NPHPGSLRYGVIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKP 172          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.213e-41
Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = 3
Query:  402 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            NPID CWR +  W  NR+ LA C +G+G+ AIGG++G  YVVT+P  D+P  P PGTLR+AV Q KPLWI F RDMVI LK +L++NS+KTIDGRGA V IANG C+ I+ V +VIIHG+ +HDCK
Sbjct:   36 NPIDACWRRNPKWATNRQALAHCAVGYGKAAIGGKNGPIYVVTNP-SDNPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCK 160          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.355e-39
Identity = 73/131 (55.73%), Postives = 96/131 (73.28%), Query Frame = 3
Query:  387 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDC 776
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G  Y VT+  DDDPVNP PGTLR+   +D+PLWI+F  +M I+LK  + +  +KT DGRGA V+I NGG C+ I+ V+NVIIHGLH++ C
Sbjct:   18 SCFSDNPIDSCWRGDSNWAQNRMKLADCAVGFGSSTMGGKGGDLYTVTNS-DDDPVNPAPGTLRYGATRDRPLWIIFSGNMNIKLKMPMYIAGYKTFDGRGAQVYIGNGGPCVFIKRVSNVIIHGLHLYGC 147          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNVI (Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.770e-39
Identity = 73/131 (55.73%), Postives = 97/131 (74.05%), Query Frame = 3
Query:  387 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDC 776
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+   ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ NGG C+ ++ V++VI+HGLH+H C
Sbjct:   18 SCCSDNPIDSCWRGDSNWGQNRMKLADCAVGFGSSTMGGKGGDFYTVTSA-DDNPVNPTPGTLRYGATREKTLWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHGLHIHGC 147          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.726e-39
Identity = 77/131 (58.78%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  390 CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            C   N ID CWRCD  W ++R+++ADC +GFG NA+GG+ G +Y+VTD  DDD V+PKPGTLR  VIQ  PLWI F R M I+L +ELIV+S KTIDGRG  VHIANG  I IQ  +NVII  L +H+  P
Sbjct:   43 CMAVNSIDKCWRCDPFWAEDRQKMADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVP 173          
The following BLAST results are available for this feature:
BLAST of CX046903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL7_ARATH9.690e-4655.29Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]
PEL3_ARATH5.317e-4461.07Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL16_ARATH2.639e-4362.99Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
PEL_TOBAC5.878e-4353.50Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL6_ARATH7.678e-4360.32Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL17_ARATH1.003e-4262.20Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]
PEL4_ARATH4.213e-4161.11Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
SBP_CRYJA1.355e-3955.73Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAJ1_JUNVI1.770e-3955.73Major pollen allergen Jun v 1 OS=Juniperus virgini... [more]
PEL56_SOLLC6.726e-3958.78Probable pectate lyase P56 OS=Solanum lycopersicum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H09-P17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046903 ID=CX046903; Name=CX046903; organism=Citrus sinensis; type=EST; length=782bp
CACATTCTTCTCTCTCTCTCTTTCCTTCTCTGCTGCTTTTTCTTTCTTCC
TTTCTTTTTTTTCTCGGTTGTGTTTGGGAAGTGGGAAAGAGAGAGAAAAT
CAAAGAAAACAACGCAATGGCGGTGACGCAGCGTGGCATTTGTCTCTGTT
TTGCTGTCGTTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAAC
GAGCAAGACGTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAA
CTCAACAATGGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAAC
ATGCAGTTGATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACC
CGCAACAGCACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGG
TAATCCCATTGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACC
GCAAGCGTCTTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGT
GGCCGTGATGGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCC
TGTTAACCCCAAACCTGGAACTTTACGCCATGCTGTTATCCAGGATAAGC
CTCTCTGGATTGTTTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAA
CTGATTGTCAATAGCTTCAAGACCATTGATGGTCGTGGGGCGAATGTGCA
CATTGCTAATGGAGGTTGCATCACTATCCAATTTGTGACCAATGTGATCA
TTCACGGTCTTCACGTTCATGACTGTAAACCC
back to top