CX046903

Overview
NameCX046903
Unique NameCX046903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.726e-39
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 3
Query:  387 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDC 776
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+   ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ NGG C+ ++ V++VI+H LH+H C
Sbjct:   18 SCYSDNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGC 147          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.147e-38
Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = 3
Query:  387 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDC 776
            SC + NPID CWR D NW +NR +LADC +GFG +A+GG+ G FY VT   DDDPVNP PGTLR+   +++ LWI+F +++ I+L   L +   KTIDGRGA VHI NGG C+ ++ V++VI+HGL++H C
Sbjct:   18 SCFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVTSS-DDDPVNPAPGTLRYGATRERSLWIIFSKNLNIKLNMPLYIAGNKTIDGRGAEVHIGNGGPCLFMRTVSHVILHGLNIHGC 147          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.694e-38
Identity = 78/155 (50.32%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  315 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            P   A  VE    ++ E R+    +C   N ID CWRC  +W  NR+ LADC  GF +   GG+ G  Y VT  +DDD  NPK GTLR A  Q++PLWI+FKR+MVI L QEL+VNS KTIDGRG  V+I N G +T+  V N+IIH +++HD K
Sbjct:   22 PVRSAEDVEEFLPSANETRR-SLKACEAHNIIDKCWRCKADWANNRQALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAG-LTLMNVKNIIIHNINIHDIK 174          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.820e-37
Identity = 73/129 (56.59%), Postives = 90/129 (69.77%), Query Frame = 3
Query:  393 GTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            G  N ID CWR   +W +NRK LADC  GFG+  +GG+DG  Y VT   DDD  NPK GTLR    Q++PLWI+F+RDMVI+L +E++VNS KTIDGRGA V I N G  T+  V NVIIH +++HD K
Sbjct:   45 GAYNIIDGCWRGKADWAENRKALADCAQGFGKGTVGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFERDMVIRLDKEMVVNSDKTIDGRGAKVEIINAG-FTLNGVKNVIIHNINMHDVK 172          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.124e-36
Identity = 67/126 (53.17%), Postives = 92/126 (73.02%), Query Frame = 3
Query:  402 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDC 776
            NPID CWR D NW +NR +LADC +GFG + +GG+ G  Y VT   +D+PVNP PGTLR+   ++K LWI+F ++M I+L+  L V  +KTIDGRGA VH+ NGG C+ ++  ++VI+HGLH+H C
Sbjct:    2 NPIDSCWRGDSNWDQNRMKLADCVVGFGSSTMGGKGGEIYTVTSS-EDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLQMPLYVAGYKTIDGRGAVVHLGNGGPCLFMRKASHVILHGLHIHGC 126          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.080e-36
Identity = 74/142 (52.11%), Postives = 94/142 (66.20%), Query Frame = 3
Query:  354 NSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            N T R   G   C   N ID CWRC  +W +NR+ L +C  GFG+   GG+ G  Y+VT  +DDD VNPK GTLR    QD+PLWI+F+RDM+I L+QE++V S KTIDGRGA V +  GG IT+  V NVIIH + +HD +
Sbjct:   36 NDTRRSLQG---CEAHNIIDKCWRCKPDWAENRQALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGG-ITLMNVKNVIIHNIDIHDVR 173          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.960e-36
Identity = 77/153 (50.33%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  315 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHD 773
            P   A  ++    ++ E R L   +CGT N ID CWR   +W +NRK LADC  GF +  IGG+DG  Y VT   DDD  NPK GTLR    Q++PLWI+F RDMVI+L +EL +N+ KTIDGRGA V I N G   I  V N+IIH + +HD
Sbjct:   22 PVRSAEDLQQILPSANETRSLT--TCGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIINAG-FAIYNVKNIIIHNIIMHD 171          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.960e-36
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 3
Query:  387 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            +C   N ID CWR   +W  NR+ LADC  GF +   GG+ G  Y VT   DDD  NPK GTLR A  Q++PLWI+FK DMVI L QEL+VNS KTIDGRG  V I NGG +T+  V N+IIH +++HD K
Sbjct:   44 ACEALNIIDKCWRGKADWENNRQALADCAQGFAKGTYGGKWGDVYTVTSNLDDDVANPKEGTLRFAAAQNRPLWIIFKNDMVINLNQELVVNSDKTIDGRGVKVEIINGG-LTLMNVKNIIIHNINIHDVK 173          
The following BLAST results are available for this feature:
BLAST of CX046903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MPAJ1_JUNAS6.726e-3954.96Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
MPAC1_CHAOB1.147e-3854.20Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
MPA12_AMBAR5.694e-3850.32Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
MPA11_AMBAR4.820e-3756.59Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPAC1_CUPAR3.124e-3653.17Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]
MPAA2_AMBAR4.080e-3652.11Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
MPA14_AMBAR6.960e-3650.33Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]
MPA13_AMBAR6.960e-3654.96Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H09-P17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046903 ID=CX046903; Name=CX046903; organism=Citrus sinensis; type=EST; length=782bp
CACATTCTTCTCTCTCTCTCTTTCCTTCTCTGCTGCTTTTTCTTTCTTCC
TTTCTTTTTTTTCTCGGTTGTGTTTGGGAAGTGGGAAAGAGAGAGAAAAT
CAAAGAAAACAACGCAATGGCGGTGACGCAGCGTGGCATTTGTCTCTGTT
TTGCTGTCGTTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAAC
GAGCAAGACGTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAA
CTCAACAATGGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAAC
ATGCAGTTGATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACC
CGCAACAGCACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGG
TAATCCCATTGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACC
GCAAGCGTCTTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGT
GGCCGTGATGGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCC
TGTTAACCCCAAACCTGGAACTTTACGCCATGCTGTTATCCAGGATAAGC
CTCTCTGGATTGTTTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAA
CTGATTGTCAATAGCTTCAAGACCATTGATGGTCGTGGGGCGAATGTGCA
CATTGCTAATGGAGGTTGCATCACTATCCAATTTGTGACCAATGTGATCA
TTCACGGTCTTCACGTTCATGACTGTAAACCC
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