CX046902

Overview
NameCX046902
Unique NameCX046902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.525e-95
Identity = 157/239 (65.69%), Postives = 187/239 (78.24%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 828
            + TN+IIHG+++HDCKP    M++  P H GW   +DGDA++IFG  H+WIDH SLS+C DGL+DA+ GSTAITISNNHMTHH++VMLLGHSDSYT+DK MQVTIA+NHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA+PTI SQGNR+ AP   F KEVTK  D   S+W+ WNWRSEGD+LLNGAYF                  A+ SS+VGSIT+ AG L+CR+ R+C
Sbjct:  171 YATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGDAVAIFGGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC 409          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.626e-95
Identity = 158/239 (66.11%), Postives = 185/239 (77.41%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 828
            + +N+IIHG+H+HDCK  GN  +R+SP H GW T +DGD ISIF S  IWIDHNSLS+C DGL+DA+ GSTAITISNN+MTHH++VMLLGHSDSYT+DK MQVTIA+NHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA+PTI SQGNR+ AP   F KEVTK  +   S+WK WNWRSEGDL+LNGAYF                   + S++V S+T  AGAL CRK  +C
Sbjct:  163 YASNIIIHGIHIHDCKQAGNGNIRNSPHHSGWWTQSDGDGISIFASKDIWIDHNSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCRKGSRC 401          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.613e-92
Identity = 155/239 (64.85%), Postives = 186/239 (77.82%), Query Frame = -2
Query:  112 TNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF--TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 822
            +N+IIHG+++HDCK +GN  +R SP H GW  V+DGD ISIFG  +IW+DH SLS+C DGL+DA+ GSTAITISNN+ THH++VMLLGHSDS+T+DK MQVT+A+NHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA PTINSQGNR+ AP   + KEVTK  D   SQW+ WNWRSEGDL+LNGAYF  T                 A+ SS+VGSIT+ AG + C+K  +C
Sbjct:  166 SNIIIHGINIHDCKQSGNGNIRDSPNHSGWWDVSDGDGISIFGGKNIWVDHCSLSNCHDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSFTQDKGMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCKKGSRC 404          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.704e-89
Identity = 154/231 (66.67%), Postives = 173/231 (74.89%), Query Frame = -2
Query:  136 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGAL 828
            +V+N+IIH +H+H C  +GN  VRSSPTHYG+RT +DGD ISIFGS  IWIDH SLS C DGL+DAVMGST ITISNN  +HHNEVMLLGHSD Y  D  MQVTIA+NHFGE LIQRMPRCR GY HVVNND+T WEMYAIGGS NPTINSQGNRY AP N FAKEVTKRV+T    WKGWNWRSEGD+L+NGA+F                   KS+S +  IT  +G L
Sbjct:  184 YVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVL 414          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 5.290e-77
Identity = 134/239 (56.07%), Postives = 172/239 (71.97%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 828
            FV NVIIHG+H+HD KP    ++R S  H G RT +DGD ISI GSS+IWIDH SL+ C+DGL+D ++GSTAITISN H+T H++VMLLG SD+YT+D+ MQVT+A+NHFG GL+QRMPRCR+G+ HVVNNDYTHW MYA+GGS +PTI SQGNRY AP    AKEVTKR     ++W  W W+S+GDL ++GA+F                  AK  + V  +T  +GAL C+++ +C
Sbjct:  196 FVHNVIIHGIHIHDIKPGEGGLIRDSEKHSGIRTRSDGDGISIIGSSNIWIDHVSLARCSDGLIDVILGSTAITISNCHLTEHDDVMLLGASDTYTQDEIMQVTVAFNHFGRGLVQRMPRCRYGFVHVVNNDYTHWIMYAVGGSQHPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFENKYSKKDLIKAKPGTFVQRLTRFSGALNCKENMEC 434          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.539e-76
Identity = 135/230 (58.70%), Postives = 164/230 (71.30%), Query Frame = -2
Query:  142 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTA-ASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAG 828
            +V ++IIH LH++DCKP+     R           +DGD ISIFGS  IW+DH S+SHC DGL+DAVMGSTAITISNN+ THH+EVMLLGH D+Y  D  MQVTIA+NHFG+GL+QRMPRCR GY HVVNND+T W+MYAIGGS NPTINSQGNRY+AP +  AKEVTKRVD+    +W  WNWR+EGDL+ NGA+F                   K++S+V  +T  AG
Sbjct:  190 YVQHIIIHNLHIYDCKPSAGFEKRGR---------SDGDGISIFGSQKIWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAG 410          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL19_ARATH (Putative pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.338e-74
Identity = 133/241 (55.19%), Postives = 165/241 (68.46%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLN-AFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 828
            FV NVIIHGLH+H    +   M+R S  H+G RT ADGD +SI+GSS+IW+DH S+S C DGL+DA++GST ITISN+H THHN+VMLLG  ++   DK MQVT+AYNHFG+GL+QRMPR R G+ HVVNNDYTHWE+YAIGGS  PTI S GNR+ AP +    +EVTKR   +  +WK WNWRS+ D+ +NGAYF                    K+   V  +T  AGAL CR  R+C
Sbjct:  232 FVKNVIIHGLHIHHISESSGGMIRDSVDHFGMRTRADGDGLSIYGSSNIWLDHISMSKCQDGLIDAIVGSTGITISNSHFTHHNDVMLLGAQNTNEADKHMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKPHYREVTKRDYASEDEWKHWNWRSDKDVFMNGAYFRQSGNPQYKCAHTRQQMIKPKNGLAVSKLTKYAGALDCRVGRRC 472          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.032e-72
Identity = 132/241 (54.77%), Postives = 165/241 (68.46%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLN-AFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSM-VGSITSGAGALTCRKSRQC 828
            +V N+IIHGLHVH    +   ++R S  H+G R  ADGD ISIFG+++IW+DH S+S C DGL+DA+MGSTAITISN+H THHN+VMLLG  ++   DK+MQVT+AYNHFG+GL+QRMPR R G+ HVVNNDYTHWE+YAIGGS  PTI S GNR+ AP +    +EVTKR   + S+WK WNWRSE D+ +N AYF                     + M V  +T  AGAL CR  + C
Sbjct:  235 YVHNIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQRMPRVRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCRVGKAC 475          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.124e-72
Identity = 129/245 (52.65%), Postives = 161/245 (65.71%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF------TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 828
            FV NVIIH ++V    P    ++R S  H G RT +DGD IS+FG+++IWIDH S++ CADG++DA+ GSTA+TISN+H T H EVML G  D +  DK+MQ+T+A+NHFG+ L QRMPRCR+G  HVVNNDYTHWEMYAIGG+ NPTI SQGNR+ AP N  AK++TKR  T   +WK WNW+SEGD  LNGAYF                         K  +MV  +T  AG L C+    C
Sbjct:  215 FVNNVIIHNIYVKHIVPGNGGLIRDSEAHIGLRTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAWSSKPKTPLPNKFTIRPKPGTMVRKLTMDAGVLGCKLGEAC 459          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.142e-71
Identity = 133/241 (55.19%), Postives = 159/241 (65.98%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSM--VGSITSGAGALTCRKSRQC 828
            ++ NVIIHGLH+HD       MVR +  H G RT +DGD ISIFG+S+IWIDH S+  C DGL+DAV GST ITISN H T HNEVML G SDS + D+ MQ+T+A+NHFG+ LIQRMPRCR GY HVVNNDYTHW MYAIGGS +PTI  QGNR+ AP + F K+VTKR     S W  W WRSEG+L +NGAYFT                   ++    V  +T  AG L C+  + C
Sbjct:  209 YIKNVIIHGLHIHDIVEGNGGMVRDAVDHIGIRTKSDGDGISIFGASYIWIDHVSMQRCYDGLIDAVEGSTGITISNGHFTDHNEVMLFGASDSSSIDQVMQITLAFNHFGKRLIQRMPRCRWGYIHVVNNDYTHWNMYAIGGSMHPTIIHQGNRFIAPPDIFKKQVTKREYNPESVWMQWTWRSEGNLFMNGAYFTESGDPEWSSKHKDLYDGISAAPAEDVTWMTRFAGVLGCKPGKPC 449          
The following BLAST results are available for this feature:
BLAST of CX046902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PEL11_ARATH2.525e-9565.69Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL5.626e-9566.11Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL18_SOLLC2.613e-9264.85Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL12_ARATH2.704e-8966.67Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL_LILLO5.290e-7756.07Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL13_ARATH1.539e-7658.70Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL19_ARATH9.338e-7455.19Putative pectate lyase 19 OS=Arabidopsis thaliana ... [more]
PEL7_ARATH1.032e-7254.77Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]
PEL3_ARATH5.124e-7252.65Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL59_SOLLC1.142e-7155.19Probable pectate lyase P59 OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H09-P17-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046902 ID=CX046902; Name=CX046902; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTTGGATAGGTGATATACTATATAGAAGAAAAATGAAA
AACAAAACAGAAATTCGATGGCCATTTCTTTTTTCGGCCAATTTAATGAT
GAATACTATGAGCACTGACGGCTCTTGCGGCAAGTAAGAGCACCAGCACC
AGAAGTAATGGATCCAACCATGGAGGAAGACTTGGCTCCCAAGCTTGAAG
CACGAGCATAGCTAGCTGAGGCTCCTGCTCCGGATGGGGTAAAGTAGGCA
CCGTTCAGCAAGAGGTCTCCTTCAGATCTCCAGTTCCAGCCCTTCCACTG
GCTTGCAGCTGTGTCCACCCTCTTTGTTACCTCCTTTGCGAAGGCATTCA
ATGGAGCATTGTATCTGTTTCCCTGGCTGTTGATGGTGGGGTTTGCACTT
CCACCAATGGCATACATTTCCCAGTGAGTGTAGTCATTGTTCACCACATG
GAAATAACCATGTCTACACCTTGGCATTCTCTGAATGAGTCCCTCTCCAA
AATGGTTGTAAGCAATGGTTACTTGCATTTGCTTGTCCCTGGTGTAGGAA
TCACTGTGACCCAGCAGCATAACCTCATTGTGGTGGGTCATGTGATTGTT
TGAAATGGTAATGGCAGTAGATCCCATGACGGCATCAACAAGTCCATCAG
CACAATGGGAGAGTGAATTGTGATCAATCCATATATGGCTAGAGCCAAAA
ATTGATATGGCATCACCATCAGCCACTGTCCTCCACCCATAGTGAGTCGG
TGAGCTCCTAACCATGGCATTACCAGTGGGTTTACAGTCATGAACGTGAA
GACCGTGAATGATCACATTGGTCACAAAT
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