CX046902

Overview
NameCX046902
Unique NameCX046902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.437e-68
Identity = 122/239 (51.05%), Postives = 162/239 (67.78%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKS-SSMVGSITSGAGALTCRKSRQC 825
            VTNVI+HG+ +HDCKP  +  VRSSPTH G R  +DGDAI+IFGSS++WIDH  L+ C DGL+D +  STAITISNN+ T H++VMLLGH+D++ +D +M+VT+A+NHFG GL++RMPR R GY HV NN Y  W MYAIGGSA+PTI S+GN + A   +++KEVTKR       W  W WR+  D+  NGA+F P                  +  ++V S+T+ AG L C ++  C
Sbjct:  157 VTNVIVHGISIHDCKPGKSGKVRSSPTHVGHRKGSDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHNDNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSYSKEVTKR--EVKGGWNNWRWRTSNDVFKNGAFFVPSGYGSIPLPYSSAQRFTVAPGNLVPSLTADAGPLNCNRNGPC 393          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.863e-68
Identity = 124/245 (50.61%), Postives = 160/245 (65.31%), Query Frame = -2
Query:  112 FVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAK------SSSMVGSITSGAGALTCRKSRQC 828
            FV NVIIH +H+   K     ++  S  H+G RTV+DGD I+IFG++++WIDH S++ C+DG++DA+MGSTAITISN+H T H+EVML G ++    DK+MQ+T+A+NHFG+ L QRMPR R G  HVVNNDYTHWEMYAIGG+ NPTI SQGNR+ AP    +K+VTKR  T   +WK WNW+SE D  LNGAYF                   K        + V  +T  AG L C+  + C
Sbjct:  211 FVRNVIIHNIHIKQIKRGAGGLIIDSEQHFGLRTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRFGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPIEDSKQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQPGTKVRRLTKDAGTLGCKPGKSC 455          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.657e-68
Identity = 127/239 (53.14%), Postives = 161/239 (67.36%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDT-AASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V+N+II+ L++HDC P     + S   +      +DGD ISIF S  IWIDH +L  C DGL+DAV GST ITISN++M +HNEVMLLGHSD Y+ D+ M+VTIA+N+FGEGL+QRMPRCRHGYFH+VNN Y  W+MYAIGGSANPTI SQGN + A  N F KEVTKR       +WK WNW+SEGD ++NGA+FTP                A+ +S++ +     G L+C   + C
Sbjct:  160 VSNIIINNLYIHDCVPVKRNALSSLGGY------SDGDGISIFESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSCEIDQAC 392          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.706e-67
Identity = 124/239 (51.88%), Postives = 159/239 (66.53%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKS-SSMVGSITSGAGALTCRKSRQC 825
            VTNVI+HG+ +HDCKP    MVRSSPTH G R  +DGDAI+IFGSS+IWIDH  L+ C DGL+D +  ST ITISNN+ T H++VMLLGH+D + +D +M+VT+A+NHFG GL++RMPR R GY HV NN Y  W MYAIGGSA+PTI S+GN + A   + +KEVTKR       W  W WR+  D+  NGAYF P                  +  ++V S+T+ AG L C ++  C
Sbjct:  157 VTNVIVHGISIHDCKPGKYGMVRSSPTHVGHRKGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKVMLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSNSKEVTKR--EVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSISLPYSSAQRFTVAPGNLVPSLTADAGPLNCNRNGPC 393          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.217e-66
Identity = 129/245 (52.65%), Postives = 159/245 (64.90%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKE------VTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKS-SSMVGSITSGAGALTCRKSRQC 825
            V++VIIHG+ +HDCKP  +  VRSSPTH G R  +DGDAI+IF SSHIWIDH   S C DGL+D +  STA+TISNN+ T H++VMLLGH+D+   DK M+VTIA+NHFG GLI+RMPR R GY HV NN Y  W+MYAIGGSA+PTI S+GN + A  +   K+      VTKR+D +   WK W WR+  D+  NGAYF P                  S  S+V  +TS AG L C   R C
Sbjct:  147 VSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFDSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPSKKQVSSFKIVTKRID-SGYDWKRWKWRTSKDVFKNGAYFVPSGYGTVTPLYGRAERFPVSHGSLVPLLTSSAGPLHCYSGRIC 390          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.278e-62
Identity = 123/240 (51.25%), Postives = 149/240 (62.08%), Query Frame = -2
Query:  112 TNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAAS--QWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 822
            +N+II  L +H+  PT   ++R S  H G R   +GD ISIF S  IWIDH S+S   DGL+DAV  ST ITISN H T H +VML G +D Y  DK M++T+AYNHFG+ L QRMPRCR G+FH+VNNDYTHWE YAIGGS+  TI SQGNR+ A      KEVT R    AS  +W  W W S+GD + NGA FTP                  + SS VG +T  +GAL+C K R C
Sbjct:  158 SNIIISNLRIHNIVPTPGGLLRESEDHVGLRGSDEGDGISIFSSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKVMLFGANDHYVLDKDMKITLAYNHFGKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDELLVKEVTYREKLTASVAEWMKWTWISDGDDMENGATFTPSGDQNLLDKIDHLNLIKPEPSSKVGILTKFSGALSCVKGRPC 397          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 5.315e-61
Identity = 121/240 (50.42%), Postives = 150/240 (62.50%), Query Frame = -2
Query:  112 TNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAAS--QWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 822
            +NVII  L +H+  PT   ++R S  H G R   +GDAISIF S  IWIDH S+S   DGL+DAV GST ITISN H T H +VML G +D    D+ M++T+AYNHFG+ L QRMPRCR G+FH+VNNDYTHWE YAIGGS+  TI SQGNR+ A      KEVT R  + +S  +W  W W ++GD   NGA FTP                  + SS VG +T  +GAL+C+  R C
Sbjct:  159 SNVIISNLRIHNIVPTAGGLLRESDDHLGLRGADEGDAISIFNSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKVMLFGANDHAEEDRGMKITLAYNHFGKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDKLLVKEVTYREKSTSSVEEWMKWTWITDGDDFENGATFTPSGDQNLLSKIDHLNLIQPEPSSKVGLLTKFSGALSCKIRRPC 398          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.002e-59
Identity = 117/238 (49.16%), Postives = 145/238 (60.92%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V +VIIHG+ +HDCK   N M              DGD I +F S+H+WIDH  LS C DGL+D ++ STA+TISNN+ T H++VMLLGH DSY  DK M+VTIA+N FG GLI+RMPR R GY HV NN Y  W+MYAIGGSANP I S+GN + AP    +K+VTKR+  A    K W W +  D+ +NGA+F P                    S+V S+TS AG L C   R C
Sbjct:  146 VKHVIIHGISIHDCKADPNGM--------------DGDGIRVFQSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSSKQVTKRM-MAGPDSKRWKWGTSRDVFMNGAFFGPPGVIVRPLYKGGEGFRVAHGSLVPSLTSSAGPLRCYVGRIC 368          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.163e-54
Identity = 104/202 (51.49%), Postives = 136/202 (67.33%), Query Frame = -2
Query:  241 VTNVIIHGLHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 825
            V++VI+H LH+H C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS C+DGL+D  +GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   + S    W WRS  D  +NGAYF
Sbjct:  134 VSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYF 330          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.163e-54
Identity = 104/201 (51.74%), Postives = 134/201 (66.67%), Query Frame = -2
Query:  241 TNVIIHGLHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 822
            ++VI+HGLH+H C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS C+DGL+D  +GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+     S    W WRS  D   NGAYF
Sbjct:  114 SHVILHGLHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDQWNIYAIGGSSNPTILSEGNSFTAPNESYKKEVTKRIGCETTSACANWVWRSTRDAFTNGAYF 309          
The following BLAST results are available for this feature:
BLAST of CX046902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PEL17_ARATH3.437e-6851.05Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]
PEL6_ARATH5.863e-6850.61Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL21_ARATH7.657e-6853.14Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL16_ARATH1.706e-6751.88Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
PEL2_ARATH3.217e-6652.65Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
PEL_TOBAC6.278e-6251.25Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL56_SOLLC5.315e-6150.42Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
PEL4_ARATH1.002e-5949.16Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
MPAJ1_JUNAS2.163e-5451.49Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
MPAC1_CUPAR2.163e-5451.74Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H09-P17-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046902 ID=CX046902; Name=CX046902; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTTGGATAGGTGATATACTATATAGAAGAAAAATGAAA
AACAAAACAGAAATTCGATGGCCATTTCTTTTTTCGGCCAATTTAATGAT
GAATACTATGAGCACTGACGGCTCTTGCGGCAAGTAAGAGCACCAGCACC
AGAAGTAATGGATCCAACCATGGAGGAAGACTTGGCTCCCAAGCTTGAAG
CACGAGCATAGCTAGCTGAGGCTCCTGCTCCGGATGGGGTAAAGTAGGCA
CCGTTCAGCAAGAGGTCTCCTTCAGATCTCCAGTTCCAGCCCTTCCACTG
GCTTGCAGCTGTGTCCACCCTCTTTGTTACCTCCTTTGCGAAGGCATTCA
ATGGAGCATTGTATCTGTTTCCCTGGCTGTTGATGGTGGGGTTTGCACTT
CCACCAATGGCATACATTTCCCAGTGAGTGTAGTCATTGTTCACCACATG
GAAATAACCATGTCTACACCTTGGCATTCTCTGAATGAGTCCCTCTCCAA
AATGGTTGTAAGCAATGGTTACTTGCATTTGCTTGTCCCTGGTGTAGGAA
TCACTGTGACCCAGCAGCATAACCTCATTGTGGTGGGTCATGTGATTGTT
TGAAATGGTAATGGCAGTAGATCCCATGACGGCATCAACAAGTCCATCAG
CACAATGGGAGAGTGAATTGTGATCAATCCATATATGGCTAGAGCCAAAA
ATTGATATGGCATCACCATCAGCCACTGTCCTCCACCCATAGTGAGTCGG
TGAGCTCCTAACCATGGCATTACCAGTGGGTTTACAGTCATGAACGTGAA
GACCGTGAATGATCACATTGGTCACAAAT
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