CX046902

Overview
NameCX046902
Unique NameCX046902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNVI (Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.825e-54
Identity = 105/202 (51.98%), Postives = 135/202 (66.83%), Query Frame = -2
Query:  241 VTNVIIHGLHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 825
            V++VI+HGLH+H C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS C+DGL+D  +GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP   + KEVTKR+   + S    W WRS  D   NGAYF
Sbjct:  134 VSHVILHGLHIHGCNTSVLGDVLVSESIGVVPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPNENYKKEVTKRIGCESTSACANWVWRSTRDAFSNGAYF 330          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.689e-54
Identity = 112/247 (45.34%), Postives = 150/247 (60.73%), Query Frame = -2
Query:  109 VTNVIIHGLHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQCS 825
            V++VI+HGL++H C  +  GN ++  +    P H       DGDAI++   + +WIDHNSLS  +DGLVD  + ST +TISNNH  +H++VMLLGHSD Y+ DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP ++  KEVT+RV   + S    W WRS  D   NGAYF +                  ++ S    +T  AG LTC  S+ CS
Sbjct:  134 VSHVILHGLNIHGCNTSVSGNVLISEASGVVPVH-----AQDGDAITMRNVTDVWIDHNSLSDSSDGLVDVTLASTGVTISNNHFFNHHKVMLLGHSDIYSDDKSMKVTVAFNQFGPNAGQRMPRARYGLIHVANNNYDPWSIYAIGGSSNPTILSEGNSFTAPNDSDKKEVTRRVGCESPSTCANWVWRSTQDSFNNGAYFVSSGKNEGTNIYNNNEAFKVENGSAAPQLTKNAGVLTCILSKPCS 375          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 3.123e-53
Identity = 107/244 (43.85%), Postives = 152/244 (62.30%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPT--GNAMVRSSPTHYGWRTV--ADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V+NVIIHGLH++ C  +  GN ++  S   +G   V   DGDA+++  +++IWIDHNS S+ +DGLVD  + ST +TISNN   +H++VMLLGH D+Y+ DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ K+VT R+    +S    W W+S  D+  NGAYF +                  ++ +    +T  AG LTC  S++C
Sbjct:  134 VSNVIIHGLHLYGCSTSVLGNVLINES---FGVEPVHPQDGDALTLRTATNIWIDHNSFSNSSDGLVDVTLSSTGVTISNNLFFNHHKVMLLGHDDAYSDDKSMKVTVAFNQFGPNCGQRMPRARYGLVHVANNNYDPWTIYAIGGSSNPTILSEGNSFTAPNESYKKQVTIRIGCKTSSSCSNWVWQSTQDVFYNGAYFVSSGKYEGGNIYTKKEAFNVENGNATPQLTKNAGVLTCSLSKRC 374          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.312e-51
Identity = 106/239 (44.35%), Postives = 143/239 (59.83%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V N+IIH +++HD K     M++S+      R  +DGDAI++ GSS IWIDH SLS  +DGL+D  +GS+ +T+SN   T H  V+LLG  D++ +DK M  T+A+N F + + QRMPRCR G+F VVNN+Y  W  YAIGGS+ PTI SQGNR+ AP +   K V  R  T  ++   WNWR++ DLL NGA F P                 A+    V  +TS AG L+C +   C
Sbjct:  160 VKNIIIHNINIHDIKVCPGGMIKSNDGPPILRQQSDGDAINVAGSSQIWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVLLLGADDTHYQDKGMLATVAFNMFTDHVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAPTILSQGNRFFAPDDIIKKNVLARTGTGNAESMSWNWRTDRDLLENGAIFLPSGSDPVLTPEQKAGMIPAEPGEAVLRLTSSAGVLSCHQGAPC 398          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.238e-51
Identity = 109/239 (45.61%), Postives = 140/239 (58.58%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V NVIIH +++HD K     +++S+      R  +DGDAISI GSS IWIDH SLS   DGLVDA +G+T +T+SN+  T H  V+L G  D    D+ M  T+A+N F + + QRMPRCRHG+F VVNN+Y  W  YAIGGSA+PTI SQGNR+ AP     K V  R   AA++   WNWR+  D+L NGA F                   A+      S+TS AG L+C+    C
Sbjct:  158 VKNVIIHNINMHDVKVNPGGLIKSNDGPAAPRAGSDGDAISISGSSQIWIDHCSLSKSVDGLVDAKLGTTRLTVSNSLFTQHQFVLLFGAGDENIEDRGMLATVAFNTFTDNVDQRMPRCRHGFFQVVNNNYDKWGSYAIGGSASPTILSQGNRFCAPDERSKKNVLGRHGEAAAESMKWNWRTNKDVLENGAIFVASGVDPVLTPEQSAGMIPAEPGESALSLTSSAGVLSCQPGAPC 396          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.818e-51
Identity = 106/239 (44.35%), Postives = 138/239 (57.74%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V NVIIH + +HD +      ++S+      R  +DGDAI + GSS IWIDH +LS   DGLVD   GST +TISN   THH + +LLG SD++ +D +M VT+AYN F   + +RMPRCR G+F +VNN Y  W+ YAIGGS+NPTI SQGN++ AP   + K V  R      +W  WNWR++ D+L NGA F                   A+   MV  +T  AG LTC     C
Sbjct:  159 VKNVIIHNIDIHDVRVLPGGRIKSNGGPAIPRHQSDGDAIHVTGSSDIWIDHCTLSKSFDGLVDVNWGSTGVTISNCKFTHHEKAVLLGASDTHFQDLKMHVTLAYNIFTNTVHERMPRCRFGFFQIVNNFYDRWDKYAIGGSSNPTILSQGNKFVAPDFIYKKNVCLRTGAQEPEWMTWNWRTQNDVLENGAIFVASGSDPVLTAEQNAGMMQAEPGDMVPQLTMNAGVLTCSPGAPC 397          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.111e-50
Identity = 105/239 (43.93%), Postives = 138/239 (57.74%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V N+IIH +++HD K     M++S+      R  +DGD I++ GSS IWIDH SLS   DGLVD  +GST +TISN   T  ++ +LLG  D++ +DK M  T+A+N F + + QRMPRCR G+F VVNN+Y  W  YAIGGS+ PTI  QGNR+ AP +   K V  R  T A++   WNWRS+ DLL NGA F T                 A+       +TS AG  +C     C
Sbjct:  159 VKNIIIHNINIHDVKVLPGGMIKSNDGPPILRQASDGDTINVAGSSQIWIDHCSLSKSFDGLVDVTLGSTHVTISNCKFTQQSKAILLGADDTHVQDKGMLATVAFNMFTDNVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAPTILCQGNRFLAPDDQIKKNVLARTGTGAAESMAWNWRSDKDLLENGAIFVTSGSDPVLTPVQSAGMIPAEPGEAAIKLTSSAGVFSCHPGAPC 397          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.172e-40
Identity = 99/240 (41.25%), Postives = 129/240 (53.75%), Query Frame = -2
Query:  112 VTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRV-DTAASQWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 825
            V N+IIH + +HD       +++S       R  +DGDAI I G S IWIDH SLS   DGL+DA  GST  T+SN   T H  ++L    D    ++ M  T+A+N F + + QRMP  RHG+  VVNN+Y  W  YA+GGSA PTI SQGNR+ A  +   KEV  R  ++A S+   WNWRS  D+  NGA F P                 A+    V  +TS AG L+C+    C
Sbjct:  159 VKNIIIHNIIMHDIVVNPGGLIKSHDGPPVPRKGSDGDAIGISGGSQIWIDHCSLSKAVDGLIDAKHGSTHFTVSNCLFTQHQYLLLFWDFD----ERGMLCTVAFNKFTDNVDQRMPNLRHGFVQVVNNNYERWGSYALGGSAGPTILSQGNRFLA--SDIKKEVVGRYGESAMSESINWNWRSYMDVFENGAIFVPSGVDPVLTPEQNAGMIPAEPGEAVLRLTSSAGVLSCQPGAPC 392          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PELA_DICD3 (Pectate lyase A OS=Dickeya dadantii (strain 3937) GN=pelA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 55/186 (29.57%), Postives = 89/186 (47.85%), Query Frame = -2
Query:  361 NVIIHGLHVH---DCKPTGNAMVRSSPTHY----GWRTVADGDAISIFGSSHIWIDHNSLSHCA-----------------DGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYT-RDK-QMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNN-------DYTHWEMYAIGGSANPTINSQGNRY 819
            NVII  +++    D +P           HY    GW    DG  I+  G+ H+W+DH ++S  +                 DG +D   GS  +TISN+    H++ ML+GHSD+ + +DK ++ VT+  N F   + +R PR R+G  H  NN       D  +  +Y+ G   + ++ S+GN +
Sbjct:  146 NVIIRNVYIQTPIDVEP-----------HYEKGDGWNAEWDGMNITN-GAHHVWVDHVTISDGSFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDKGKLHVTLFNNVFNR-VTERAPRVRYGSIHSFNNVFNGDVKDPVYRYLYSFGIGTSGSVLSEGNSF 318          
BLAST of CX046902 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 54/190 (28.42%), Postives = 87/190 (45.79%), Query Frame = -2
Query:  325 NVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCA-----------------DGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDK-QMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDY-------THWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVT 819
            NVII  +   D          +  +   W +  D   I+I G +HIWIDH + +  +                 DG  DA  G+  IT+S N+   H++  + G SDS T D  ++++T+ +N + + ++QR PR R G  HV NN Y       ++   YA G   +  I +Q N  + P  + AK ++
Sbjct:  172 NVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDN--ITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 358          
The following BLAST results are available for this feature:
BLAST of CX046902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
MPAJ1_JUNVI2.825e-5451.98Major pollen allergen Jun v 1 OS=Juniperus virgini... [more]
MPAC1_CHAOB3.689e-5445.34Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
SBP_CRYJA3.123e-5343.85Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPA12_AMBAR1.312e-5144.35Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
MPA11_AMBAR2.238e-5145.61Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPAA2_AMBAR3.818e-5144.35Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
MPA13_AMBAR1.111e-5043.93Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPA14_AMBAR5.172e-4041.25Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]
PELA_DICD33.862e-1129.57Pectate lyase A OS=Dickeya dadantii (strain 3937) ... [more]
PEL_BACSU5.044e-1128.42Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H09-P17-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046902 ID=CX046902; Name=CX046902; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTTGGATAGGTGATATACTATATAGAAGAAAAATGAAA
AACAAAACAGAAATTCGATGGCCATTTCTTTTTTCGGCCAATTTAATGAT
GAATACTATGAGCACTGACGGCTCTTGCGGCAAGTAAGAGCACCAGCACC
AGAAGTAATGGATCCAACCATGGAGGAAGACTTGGCTCCCAAGCTTGAAG
CACGAGCATAGCTAGCTGAGGCTCCTGCTCCGGATGGGGTAAAGTAGGCA
CCGTTCAGCAAGAGGTCTCCTTCAGATCTCCAGTTCCAGCCCTTCCACTG
GCTTGCAGCTGTGTCCACCCTCTTTGTTACCTCCTTTGCGAAGGCATTCA
ATGGAGCATTGTATCTGTTTCCCTGGCTGTTGATGGTGGGGTTTGCACTT
CCACCAATGGCATACATTTCCCAGTGAGTGTAGTCATTGTTCACCACATG
GAAATAACCATGTCTACACCTTGGCATTCTCTGAATGAGTCCCTCTCCAA
AATGGTTGTAAGCAATGGTTACTTGCATTTGCTTGTCCCTGGTGTAGGAA
TCACTGTGACCCAGCAGCATAACCTCATTGTGGTGGGTCATGTGATTGTT
TGAAATGGTAATGGCAGTAGATCCCATGACGGCATCAACAAGTCCATCAG
CACAATGGGAGAGTGAATTGTGATCAATCCATATATGGCTAGAGCCAAAA
ATTGATATGGCATCACCATCAGCCACTGTCCTCCACCCATAGTGAGTCGG
TGAGCTCCTAACCATGGCATTACCAGTGGGTTTACAGTCATGAACGTGAA
GACCGTGAATGATCACATTGGTCACAAAT
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