CX046898

Overview
NameCX046898
Unique NameCX046898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046898 vs. ExPASy Swiss-Prot
Match: ASNS_MOUSE (Asparagine synthetase [glutamine-hydrolyzing] OS=Mus musculus GN=Asns PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = -2
Query:  311 LDKDFINVAMAIDPEWKMINPQEGRLEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG---VGYSWIDGLKAHAEQHVTDKMMQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGR 748
            LD  F +  +++ P+ ++  P+ G +EK +LR+ F+D     LPK +L+R KE FSDG   V  SW   L+ + E  V D+MM  A   FP NTP TKE Y+YR IFER +P  +  LT                W  +W N  DPS R
Sbjct:  421 LDHRFSSYYLSLPPDMRI--PKNG-IEKHLLRETFEDCN--LLPKEILWRPKEAFSDGITSVKNSWFKILQDYVEHQVDDEMMSAASQKFPFNTPKTKEGYFYRQIFERHYPGRADWLT--------------HYWMPKWINATDPSAR 550          
BLAST of CX046898 vs. ExPASy Swiss-Prot
Match: ASNS_MESAU (Asparagine synthetase [glutamine-hydrolyzing] OS=Mesocricetus auratus GN=ASNS PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 58/149 (38.93%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  311 LDKDFINVAMAIDPEWKMINPQEGRLEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG---VGYSWIDGLKAHAEQHVTDKMMQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGR 748
            LD  F +  +++ PE ++  P+ G +EK +LR+ F+D     LPK +L+R KE FSDG   V  SW   L+ + E  V D MM  A   FP NTP TKE Y+YR IFE  +P  +  LT                W  +W N  DPS R
Sbjct:  421 LDHRFSSYYLSLPPEMRV--PKNG-IEKHLLRETFEDSN--LLPKEILWRPKEAFSDGITSVKNSWFKILQDYVEHQVDDAMMATAAQKFPFNTPKTKEGYFYRQIFEHHYPGRADWLT--------------HYWMPKWINATDPSAR 550          
BLAST of CX046898 vs. ExPASy Swiss-Prot
Match: ASNS_CHICK (Asparagine synthetase [glutamine-hydrolyzing] OS=Gallus gallus GN=ASNS PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = -2
Query:  311 LDKDFINVAMAIDPEWKMINPQEGRLEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGY---SWIDGLKAHAEQHVTDKMMQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGR 748
            LD  F +  +++  E ++  P+ G +EK++LR++F+D     LPK +L+R KE FSDG+     SW   L+ + +Q V D +++ A   +P N P TKE+YYYR IFE+ +P  S+ L                 W   W    DPS R
Sbjct:  421 LDHRFTSYYLSLPAELRI--PKNG-IEKYLLRQSFEDSN--LLPKEILWRPKEAFSDGIASVKKSWFSILQDYIDQQVDDLLLEKAAEKYPFNPPRTKESYYYRQIFEKHYPGRSSWL--------------PHYWMPRWVEATDPSAR 550          
BLAST of CX046898 vs. ExPASy Swiss-Prot
Match: ASNS_BOVIN (Asparagine synthetase [glutamine-hydrolyzing] OS=Bos taurus GN=ASNS PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.418e-16
Identity = 55/149 (36.91%), Postives = 75/149 (50.34%), Query Frame = -2
Query:  311 LDKDFINVAMAIDPEWKMINPQEGRLEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG---VGYSWIDGLKAHAEQHVTDKMMQNAQYIFPHNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTAKAVEWDAEWANNLDPSGR 748
            LD  F +  +++ P+ ++  P+ G +EK +LR+ F+D     +PK +L+R KE FSDG   V  SW   L+ + E  V D  M +A   FP NTP TKE YYYR IFE  +P  +  L                 W   W N  DPS R
Sbjct:  421 LDHRFSSYYLSLPPDMRV--PKNG-IEKHLLRETFEDSN--LIPKEILWRPKEAFSDGITSVKNSWFRILQDYIEHQVDDAAMASAAQKFPINTPKTKEGYYYRQIFENHYPGRADWL--------------PHYWMPRWTNATDPSAR 550          
BLAST of CX046898 vs. ExPASy Swiss-Prot
Match: ASNS_MIMIV (Probable asparagine synthetase [glutamine-hydrolyzing] OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R475 PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = -2
Query:  425 LDKDFINVAMAIDPEWKMINPQEGRLEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVG---YSWIDGLKAHAEQHVTDKMMQNAQYIFPHNTPLTKEAYYYRMIFERFF 748
            LD ++++  M IDP   M   +   +EK I+R AF    + YLP+++LYR KE FSD V     +W   ++   E+  TD+ +QN+ Y F  N P  KEA YYR IF   +
Sbjct:  418 LDFNYVDFIMNIDPNLLMY--KSDYIEKKIIRDAF----KGYLPENILYRPKEAFSDAVSSKEINWYRSIQKITEEIYTDEKLQNSNYKF--NKPEIKEALYYRDIFNSHY 520          
The following BLAST results are available for this feature:
BLAST of CX046898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ASNS_MOUSE6.164e-1838.93Asparagine synthetase [glutamine-hydrolyzing] OS=M... [more]
ASNS_MESAU6.164e-1838.93Asparagine synthetase [glutamine-hydrolyzing] OS=M... [more]
ASNS_CHICK1.983e-1634.90Asparagine synthetase [glutamine-hydrolyzing] OS=G... [more]
ASNS_BOVIN4.418e-1636.91Asparagine synthetase [glutamine-hydrolyzing] OS=B... [more]
ASNS_MIMIV5.588e-1138.74Probable asparagine synthetase [glutamine-hydrolyz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H07-P13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046898 ID=CX046898; Name=CX046898; organism=Citrus sinensis; type=EST; length=752bp
TTTTACAAGATAATTATGAAGATCACATACATATAAACAACCATATGCAA
TGTTTTCTAACTTGTACACATTGCCAAAAATGAAATTACAATACAGAAGA
ACATATAAAAGATCCATAGATGATATATTTTTCTGTCTTAAGTTCACCCA
CTCTTGGGGGATTCCACAGACACTAGCTAGTGATTGCAAGCCCTGGAGCA
GCAGCTTCCATCATTCGTGGTATGTTATCGATGACCTTTGGTGGTGCCTT
AACAGCATTTGAAGCAGCTACCTGCTTTTCATAAGCTGATAGATGGACTC
CCAGTGCAGCCCTCCCAGAAGGATCAAGATTATTTGCCCACTCAGCATCC
CATTCGACAGCTTTAGCCGTGCTGCATGCTACACTCGCACCTCCTGGGAC
AGTTAGCCTGGCTGAATTCTGTGGAAAGAACCTCTCGAAAATCATTCTGT
AGTAGTAGGCTTCTTTAGTCAAAGGTGTGTTGTGTGGGAAGATGTATTGA
GCATTTTGCATCATCTTATCAGTCACATGTTGTTCAGCATGTGCTTTGAG
GCCATCAATCCAACTATAGCCAACACCATCACTGAATTGTTCCTTCTGTC
TGTACAGAACATGCTTTGGCAGATAGGGACGCTCCTCATCATCGAAGGCC
TTCCTCAGGATCCACTTCTCGAGACGTCCTTCTTGAGGATTAATCATCTT
CCACTCAGGATCTATGGCCATTGCTACATTAATAAAATCTTTGTCAAGGC
CT
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