CX046894

Overview
NameCX046894
Unique NameCX046894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLX_MIMIV (Probable DNA polymerase family X OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L318 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 68/228 (29.82%), Postives = 113/228 (49.56%), Query Frame = -1
Query:  261 RTLDDLKN-----EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL-----------SKYVKKLKEMKFLREDLIFSTHSE-----------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 845
            R++DDLK      +  ++ S  LGLKY+  ++  IPR E+  +E+LL K   ++ P++ I+  GSYRRGK + GD+DV++ HP  K+ K  L           + Y+ +L E  FL +D+ F+ + +                    P +  A  ++ +TG   LN ++R  A+ +   L++ GLF        K G  A+  L   +E ++F  LG  +L P +R L
Sbjct:  127 RSVDDLKKAIETGKVKVSTSIMLGLKYYGIVQRDIPRKEITAIEKLLSKEAHKIDPDLEIIICGSYRRGKKTSGDIDVLMYHPKMKTSKEMLHPEKFDLEPYFNLYIDRLTEKGFLIDDITFNPNKKYMGFCKYKLNPVRRIDIRFIPYNSLAPAMLYFTGPMELNTKMRSAAKKRKMILNEYGLFKT-----DKNG--AQIPLDTKSEADIFHALGMDYLTPQQREL 347          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLM_MOUSE (DNA polymerase mu OS=Mus musculus GN=Polm PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 62/246 (25.20%), Postives = 99/246 (40.24%), Query Frame = -1
Query:  264 RTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM------KFLREDLIFSTHSEE--------------------------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            RTLD+L+ +   LT  Q+ GL+Y+ D+ T + R + E +++L++ A  + LP   +   G +RRGK    D+D +I HP+     G L K +  L+        ++ R  L  S H+                                              V P   + F L+ WTG+    R LR  + + KG  L+  GLF              +      +E++VF  LG  +L P +RN
Sbjct:  260 RTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTWKAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDP----------EQKRVFHATSEEDVFRLLGLKYLPPEQRN 495          
The following BLAST results are available for this feature:
BLAST of CX046894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DPOLX_MIMIV5.136e-1929.82Probable DNA polymerase family X OS=Acanthamoeba p... [more]
DPOLM_MOUSE5.876e-1525.20DNA polymerase mu OS=Mus musculus GN=Polm PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H05-P9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046894 ID=CX046894; Name=CX046894; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTAGGATAAAAATTTTATAAGAACACAGAATTTTT
ACACCAAAAATATATACATTCAAAAACATCAAGTCTGATAACTTAAGTCG
AGCATCAAACGCAAGGCCTGTCACCATGACCACCAGCACACTTTACGGTA
TAATTAGTACCAAACATATGTCTGTTGACAGCCTCCTAAGTACAGCCTGC
CCTTTGATGCGTGCCTATCTACAGCATCATCTTACTGCTAAACACACTGC
ACATGTTTCACAAATTTCTTTCATGAGGTTCTAGCCAAGGAAATCCCAGG
AAATCAAACACCTCCTTTTCAGTATCAAATTTCAAACTTGTTCTCGCCCT
TACACCCTGTTTACCGCCTGAGCCATAAGTAGCTGGAAACAGCCCTGTAT
CATCAAGTCGGTATCCTTTGGATTCTGCTAGTAATCTCAACCTCCTATTT
AGTACATCATTCCCGGTCCATGCTATTAGCCCAAACGCATATATGTCCCT
TGGATACACCTCCTCGCTGTGAGTGCTGAAAATCAAATCCTCTCTTAAGA
ACTTCATTTCCTTTAACTTCTTCACATATTTTGACAAGAAACCCTTATGA
CTTTTTCTATCAGGATGCATAATTACAACATCTAGATCTCCACAGGAAGC
CTTTCCACGTCTGTATGATCCTCCACACAAAATGATCACCTCAGGCAAAA
CTTCTTCCCCGGCTTTCTGCAGAAGACGTTCCATCTGCTCAACCTCATGG
CGTGGAATCCTCGTCTTAATGTCATCGAAATATTTCAAACCTAATCTCTG
AGAATGTGTTAATGAATCTTCATTCTTCAAATCATCTAGTGTCCT
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