CX046888

Overview
NameCX046888
Unique NameCX046888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.191e-24
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  361 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 696
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.247e-23
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = -2
Query:  385 QAKVEKEMGAAQ----DPANV----AANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 765
            Q + E+E G A      P  V    +     K EAD RSV+VGNVDY  + EE++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  110 QQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.534e-22
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = -2
Query:  382 NKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 699
            ++EE DSRSV+VGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR
Sbjct:   94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.233e-21
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = -2
Query:  433 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 690
            EAD RSV+VGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A++L+ES   GR +KVLPKRTN PG+
Sbjct:  135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.119e-21
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = -2
Query:  433 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 690
            EAD RSVFVGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KVLPKRTN PG+
Sbjct:  139 EADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.180e-20
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  334 ANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGK 702
            A++ EADSRS+FVGN+    TPE+++ HF+ CG + R+T+L D+  G PKG+ Y+EF      ++ALQLN  EL G+++ V  KRTN+PG  +        ++  ++N P M Y      PY PPY    SP   +GY K
Sbjct:   56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNK 195          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.001e-17
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  433 QAKVEKEMGAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 765
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EEV++HF+ CG + R TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   35 QNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.560e-16
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  433 QAKVEKEMGAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 765
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EE+++HF+ CG + + TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   29 QNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137          
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.856e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  460 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 684
            D RSVFVGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   D+V  AL+LN SEL GR+L+V+
Sbjct:  285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360          
The following BLAST results are available for this feature:
BLAST of CX046888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
EPA2A_XENLA1.191e-2449.58Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
EPAB2_HUMAN2.247e-2346.32Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
PABP2_DICDI5.534e-2252.29Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
EPAB2_RAT1.233e-2157.47Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
EPAB2_MOUSE6.119e-2157.47Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST5.180e-2041.43RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]
YQOC_CAEEL7.001e-1741.96Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL1.560e-1640.18Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
RBM34_HUMAN8.856e-1248.68RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H02-P3-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046888 ID=CX046888; Name=CX046888; organism=Citrus sinensis; type=EST; length=901bp
TTGCTTCCACGAAGAGGCTATAGTTCTTATTAGAATATGTGAAAATTGAA
ACTTAACCACGTTGTCTGCACATGCAAGTTAGGAATTGTCCAACATCCAA
ATTCAACAAGAAATTCCATAAAGTTCATGCTAATAATGTTGATCATTCAA
GACATCAATAATAAACATGTAGCTAATAAATCCTTTGTTTCCTATCTAAA
GCAGGATACAAAAGCACCATGATACATTGAATTTTTTAGTTTATGGATGA
TCCACAAATGTCACCATCTTCAACAGGAGCACAATCTGCTAGTAGTAGGG
CATGTACCTCATTGGCCTTCTGAACCTCGGAACCTTCCCATATCCATAAG
GTGAATAGAAATAAGGAGGTACATAGGGCCTCCTGCCTCGGTACCCCATG
TAAGGATTGAAACGCCTTGGACGATACTGCTTCATACCAGGGACATTTGT
CCTCTTAGGCAAAACCTTCAGTTGACGGCCATGTAATTCAGACTCATTCA
ACTGGAGAGCCTCTTGAACAGCATCTATTTCAAGGAATTCCACATAAGCA
AAACCCTTTGGCTGGCCAAACTTGTCTGTCAGAATAGTTACCCTGTTTAC
AGTACCACAGGATTGGAAATGTTGCTGCACTTCTTCAGGAGTGCATGCAT
AATCTACATTGCCAACAAAGACTGATCGTGAATCTGCCTCTTCTTTGTTT
GCTTGATTAGCAGCCACATTAGCAGGATCTTGAGCAGCGCCCATCTCTTT
CTCGACCTTAGCTTGCATCTCACGAAGAGCAGCAGCTTCCTCCTCCATCT
CCTTCAACCGCTTCTTCATCTCATCCAGCTCCTTGACGGCGTCGTCATCG
GCCGCCGACATGTCGACGTCAGTATTGTGAGCGTCCATGTCACCTTCCAC
G
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