CX046888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.191e-24 Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -2 Query: 361 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 696 K+E D RSV+VGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++E+ GR +KVLPKRTN+PG+ +R R R N RG+RP P+ Sbjct: 87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.247e-23 Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = -2 Query: 385 QAKVEKEMGAAQ----DPANV----AANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 765 Q + E+E G A P V + K EAD RSV+VGNVDY + EE++ HF CG V+RVTIL DKF G PKG+AY+EF +VQ A++L++S GR +KVLPKRTN PG+ + G RG Sbjct: 110 QQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.534e-22 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = -2 Query: 382 NKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 699 ++EE DSRSV+VGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEF+ +++ A+ LN+S + RQLK+ PKRTN+P M+Q P + G RGR Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.233e-21 Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = -2 Query: 433 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 690 EAD RSV+VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +VQ A++L+ES GR +KVLPKRTN PG+ Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 6.119e-21 Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = -2 Query: 433 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 690 EAD RSVFVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +V+ A+ L+ES GR +KVLPKRTN PG+ Sbjct: 139 EADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.180e-20 Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = -2 Query: 334 ANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGK 702 A++ EADSRS+FVGN+ TPE+++ HF+ CG + R+T+L D+ G PKG+ Y+EF ++ALQLN EL G+++ V KRTN+PG + ++ ++N P M Y PY PPY SP +GY K Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNK 195
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.001e-17 Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = -2 Query: 433 QAKVEKEMGAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 765 Q K+ K + +A A V + ++ D++SVF+GNVD+ T EEV++HF+ CG + R TI DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM Sbjct: 35 QNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.560e-16 Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = -2 Query: 433 QAKVEKEMGAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 765 Q K+ K + +A A V + ++ D++SVF+GNVD+ T EE+++HF+ CG + + TI DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM Sbjct: 29 QNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137
BLAST of CX046888 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 8.856e-12 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = -2 Query: 460 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 684 D RSVFVGN+ Y +++HF CG++ V I+ DK G KGF YV F D+V AL+LN SEL GR+L+V+ Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360 The following BLAST results are available for this feature:
BLAST of CX046888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046888 ID=CX046888; Name=CX046888; organism=Citrus sinensis; type=EST; length=901bpback to top |