DN618457
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28 Identity = 66/120 (55.00%), Postives = 87/120 (72.50%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 538 AR+ G+++P KR+E L YI+G+G R+R+IL + + + KD+SEEE+ TIRD + K ++IEGDLRR AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + AI+GKK Sbjct: 2 ARIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_BACLD (30S ribosomal protein S13 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28 Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL YI G+GRT A+QIL + + E+ +D++EEEL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQILKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_GLUDA (30S ribosomal protein S13 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.801e-28 Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 550 AR+ GV IP NKR+ L+YI+G+G T+A +I +++ E ++ ++S++E++ IR+ + S+Y +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKKKA R Sbjct: 2 ARIAGVNIPTNKRVTIGLRYIYGIGETKAEEICRRLEIPAERRVN-ELSDDEILKIRELIDSEYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_EXIS2 (30S ribosomal protein S13 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.801e-28 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP KRI SL YI+GVG+T A+++L + + E+ T++++EE+L +RD + K +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPREKRIVISLTYIYGVGKTTAQKVLKEAGISEDTRTRELTEEQLNQLRDGLDKVKVEGDLRREISLNIKRLIEIGCYRGVRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_BACHD (30S ribosomal protein S13 OS=Bacillus halodurans GN=rpsM PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.801e-28 Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL YI+GVGR+ A++IL + EN +D++EEEL IR V ++ +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAVEEFKVEGDLRREVSLNIKRLIEIGAYRGIRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_LYSSC (30S ribosomal protein S13 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.352e-28 Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL YI G+G+T A+++L D + E+ +D++E+EL IR+++ Y +EGDLRR +L I+RL EI +RGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGKTTAQKVLADAGISEDTRVRDLTEDELNKIREQLDSYKLEGDLRRETSLNIKRLMEIGSFRGIRHRRGLPVRGQNTKNNARTRKGPRKTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_GEOSW (30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) GN=rpsM PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.352e-28 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL YI+G+G++ A++IL + + E+ +D++EEEL IR+ V + +EGDLRR +L I+RL EI CYRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_ANOFW (30S ribosomal protein S13 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28 Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL YI+G+G+ A++IL + + E+ +D++EEEL IR+ V + +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKATAQKILAEAGVSEDTRVRDLTEEELGKIREIVDRLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RR13_PORYE (30S ribosomal protein S13-2, chloroplastic OS=Porphyra yezoensis GN=rps13-2 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28 Identity = 60/124 (48.39%), Postives = 92/124 (74.19%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 550 AR+ GV++P NKRIE +L YI+G+G +R+++IL ++ I +D++++++++IR+ + S Y IEGDL+RF +++I+RL EI YRG RH GLP RGQ T+ N RT +G + +AGKKKAPR Sbjct: 2 ARIAGVDLPRNKRIEIALTYIYGIGLSRSKEILEKTNIDADIKCQDLNDQQVVSIREILESNYQIEGDLKRFESMSIKRLMEISTYRGRRHRLGLPLRGQRTRTNARTRRGGKKTVAGKKKAPR 125
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_MYCMO (30S ribosomal protein S13 OS=Mycoplasma mobile GN=rpsM PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.240e-28 Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 538 AR+ VEIPNNKR+ SL Y++G+GR+ ++QIL + ++ I KD+SEE+L IR+ S++ EGDLRR L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R +AGKK Sbjct: 2 ARILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIASRFTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120 The following BLAST results are available for this feature:
BLAST of DN618457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618457 ID=DN618457; Name=DN618457; organism=Citrus sinensis; type=EST; length=666bpback to top |