DN618457
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_ORITI (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 61/121 (50.41%), Postives = 88/121 (72.73%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ V +P NKR+ L YI+G+GR+ A++I ++++ NK KD+S +EL+ +R + SKY +EGDLRR L I++ K+I+CY G+RHI+ LP RGQ+T +N RT KGK +AIAGKKK Sbjct: 2 ARISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKK 122
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_ONYPE (30S ribosomal protein S13 OS=Onion yellows phytoplasma GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 60/120 (50.00%), Postives = 88/120 (73.33%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ G++IP++KR+ +L YI+G+G + +IL +L ++ I K+++E++L +R E++KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK AIAGKKK Sbjct: 2 ARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_GRABC (30S ribosomal protein S13 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsM PE=3 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 550 AR+ GV IP NKR+ SL+YI+G+G +A++I +L + + + +S++E++ IR+ + + Y +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKKK R Sbjct: 2 ARIAGVNIPTNKRVAISLRYIYGIGPAQAQKICTELSIPDERRVNQLSDDEILRIRELIDREYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_BACSU (30S ribosomal protein S13 OS=Bacillus subtilis GN=rpsM PE=1 SV=3) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL YI G+GRT A+Q+L + + E+ +D++EEEL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_BACP2 (30S ribosomal protein S13 OS=Bacillus pumilus (strain SAFR-032) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++E+EL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEDELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_BACA2 (30S ribosomal protein S13 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++EEEL IRD + K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ++KNN RT KG R +A KKK Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDVIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_ACIF5 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 526 AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV+K+++EGDLRR + I+RL ++ CYRGIRH +GLP GQ TK N RT KG +I Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_ACIF2 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28 Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 526 AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV+K+++EGDLRR + I+RL ++ CYRGIRH +GLP GQ TK N RT KG +I Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKGPAKSI 116
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_SYNP2 (30S ribosomal protein S13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsM PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28 Identity = 59/124 (47.58%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 550 AR+ GV++P +KRIE +L Y++G+G +RA++I+ + + + +D+S+E+ + +R V+ Y +EGDLRR ++ I+RL +I YRG RH QGLP RGQ T+ N RT +G+RV +AGKKKAPR Sbjct: 2 ARIAGVDLPRDKRIEIALTYVYGIGLSRAQEIIANTGVNPDTRVRDLSDEDALKLRSYVTDNYQVEGDLRRLESMNIKRLVDIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRVTVAGKKKAPR 125
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28 Identity = 59/120 (49.17%), Postives = 91/120 (75.83%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ G++IP++KR+ +L YI+G+G+ +++IL +L + + I K+++E++L ++R E++KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK +IAGKKK Sbjct: 2 ARIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITKYSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121 The following BLAST results are available for this feature:
BLAST of DN618457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618457 ID=DN618457; Name=DN618457; organism=Citrus sinensis; type=EST; length=666bpback to top |