DN618456

Overview
NameDN618456
Unique NameDN618456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRSV (30S ribosomal protein S13 OS=Streptococcus sanguinis (strain SK36) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.598e-27
Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ E+   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDIRVKDLTIEQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRS2 (30S ribosomal protein S13 OS=Streptococcus suis (strain 98HAH33) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.598e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   +  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRMU (30S ribosomal protein S13 OS=Streptococcus mutans GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.598e-27
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   L I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVVSLTYVYGIGLPTSKKILAAAGVSEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_RICRS (30S ribosomal protein S13 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.598e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = -2
Query:  130 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 489
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRVVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_RICRO (30S ribosomal protein S13 OS=Rickettsia rickettsii (strain Iowa) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.598e-27
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = -2
Query:  130 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV-SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 489
            AR+  V IP+NKR+  SL YI+G+G T A +I    K+ ++K  K+++++ELI +R+ + S+Y +EGDLRR   L I++ K+I+CY+G+RHI+ LP RGQ+T +N RT KGK +AIAGKKKA
Sbjct:    2 ARIASVNIPDNKRVVVSLTYIYGLGPTMAAEICNKAKISKDKKVKELTDQELIGLRNIIESEYKVEGDLRREVTLNIKKKKDIRCYQGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKA 123          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_THEEB (30S ribosomal protein S13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 56/120 (46.67%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV++P +KRIE +L YI+G+G TR+++IL    +  +  T+D+++ ++  +R  + +Y +EGDLRR  A+ I+RL +I CYRG RH  GLP RGQ T+ N RT +G R  +AGKKK
Sbjct:    2 ARIAGVDLPRDKRIEIALTYIYGIGLTRSKEILAKTGVNPDTRTRDLTDADIAALRAAIDEYQVEGDLRRLEAMNIKRLMDIGCYRGRRHRLGLPVRGQRTRTNARTRRGSRRTVAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRPZ (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRPM (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M28 GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRPG (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN618456 vs. ExPASy Swiss-Prot
Match: RS13_STRPF (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  133 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 489
            AR+ GV+IPN+KR+  SL Y++G+G   +++IL    +   I  KD++ ++   IR EV    +EGDLRR   + I+RL EI  YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKKK
Sbjct:    2 ARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of DN618456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRSV4.598e-2754.1730S ribosomal protein S13 OS=Streptococcus sanguin... [more]
RS13_STRS24.598e-2752.5030S ribosomal protein S13 OS=Streptococcus suis (s... [more]
RS13_STRMU4.598e-2753.3330S ribosomal protein S13 OS=Streptococcus mutans ... [more]
RS13_RICRS4.598e-2750.8230S ribosomal protein S13 OS=Rickettsia rickettsii... [more]
RS13_RICRO4.598e-2750.8230S ribosomal protein S13 OS=Rickettsia rickettsii... [more]
RS13_THEEB6.005e-2746.6730S ribosomal protein S13 OS=Thermosynechococcus e... [more]
RS13_STRPZ6.005e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPM6.005e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPG6.005e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPF6.005e-2752.5030S ribosomal protein S13 OS=Streptococcus pyogene... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02J13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618456 ID=DN618456; Name=DN618456; organism=Citrus sinensis; type=EST; length=589bp
CCTTTTTTTTTTTTTGGATCGAAAGCAACCAAGCCTTGTAGTCAAAATGA
TTCACATTCAAATTCAATACAATAGAAAATCAACCCTATCCATTAAATAA
ACAGGAAAAAAGTCATTTAATTAACGAGGGGCTTTCTTTTTCCCAGCAAT
AGCAACCCTCTTACCCTTCAATGTGCGACAATTGTTCTTTGTGTGCTGCC
CTCTACATGGCAAGCCCTGAATATGGCGAATTCCGCGGTAGCATTGAATC
TCCTTCAATCTCCTAATAGCAAGTGCATTGAACCGCCTCAAATCTCCTTC
AATCATGTATTTGGAGACTTCGTCACGAATTGTAATGAGCTCTTCCTCAG
ACATGTCTTTGGTGATTTTGTTCTCCATTTTGAGATCAACGAGGATTTGG
CGAGCTCTTGTGCGCCCAACTCCATGAATATACTGAAGCGAGTACTCAAT
CCGCTTGTTATTTGGAATCTCGACACCTCCAACACGAGCACATTGAATGC
TCAGACCGGGATACTGAGGCTGCTTGGAAACAGGGAAAGACAGGGAAGCG
TTGGTGAGAAGATTATTGTTATGTCCGTTGCAGATAACG
back to top