DN618452

Overview
NameDN618452
Unique NameDN618452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.305e-52
Identity = 85/143 (59.44%), Postives = 116/143 (81.12%), Query Frame = -3
Query:  216 LILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 644
            ++ +F+ SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y FL ++ +++G
Sbjct:  132 IVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFLSDDMVVVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.616e-52
Identity = 85/143 (59.44%), Postives = 115/143 (80.42%), Query Frame = -3
Query:  216 LILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 644
            ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  132 IVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTGDDMVIVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.616e-52
Identity = 85/143 (59.44%), Postives = 115/143 (80.42%), Query Frame = -3
Query:  216 LILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 644
            ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  132 IVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSDDLVIVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.640e-51
Identity = 86/143 (60.14%), Postives = 114/143 (79.72%), Query Frame = -3
Query:  216 LILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 644
            ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVPSY F  ++ +++G
Sbjct:  132 VVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.142e-51
Identity = 84/143 (58.74%), Postives = 114/143 (79.72%), Query Frame = -3
Query:  216 LILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 644
            ++ +F+ S+SAS DVLA++ +E+ LS I  G  V  KWRGKP+F+R RT+ +I     VD+  LRDPQ D +RVK PEW+++VGVCTHLGC+P+ N+GDFGG++CPCHGSHYD SGRIRKGPAPYNLEVP+Y F+ ++ +++G
Sbjct:  130 VVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 272          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.654e-51
Identity = 83/142 (58.45%), Postives = 114/142 (80.28%), Query Frame = -3
Query:  216 ILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 641
            + +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++G+CTHLGC+P+ NAGDFGG++CPCHGSHYD+SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  133 VTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLGCVPIANAGDFGGYYCPCHGSHYDVSGRIRLGPAPLNLEVPPYEFTSDDMVVVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.772e-51
Identity = 85/143 (59.44%), Postives = 114/143 (79.72%), Query Frame = -3
Query:  216 LILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 644
            ++ +FV SMSAS DVLA+A +E+ LS I  G  +T KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  132 VVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPIYEFTSDDMVIVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.772e-51
Identity = 86/142 (60.56%), Postives = 113/142 (79.58%), Query Frame = -3
Query:  216 ILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 641
            + +FV SMSAS DVLAMA +EV LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  133 VTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVVVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.063e-50
Identity = 84/142 (59.15%), Postives = 113/142 (79.58%), Query Frame = -3
Query:  216 ILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 641
            + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  133 VTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of DN618452 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.063e-50
Identity = 84/142 (59.15%), Postives = 113/142 (79.58%), Query Frame = -3
Query:  216 ILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 641
            + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  133 VTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
The following BLAST results are available for this feature:
BLAST of DN618452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_SAISC3.305e-5259.44Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_LAGLA9.616e-5259.44Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ9.616e-5259.44Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_BOVIN1.640e-5160.14Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CHICK2.142e-5158.74Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE3.654e-5158.45Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PONPY4.772e-5159.44Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO4.772e-5160.56Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR1.063e-5059.15Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA1.063e-5059.15Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618452 ID=DN618452; Name=DN618452; organism=Citrus sinensis; type=EST; length=694bp
CTTTTTTAGTAAACAAAAACAATGAAAATTTAGGTTAAAAGACAATGTGT
CAAAACCAGGCAACTTATTCTGAGTTACAGTATCCCAACCCCAATGAAAG
GGTGGCAAGACACAAAGATAGGCATTTATCTTCGACATTATCTGATAAAA
TATTTTAAAAAAAAATGAGATCCCAAATAACCATGGATCACCGGTACAGG
ACGTCACACTTATCAACCAATGAGCATCTTGTTCTCATCCAAGAAGGAGT
AAGAGGGTACTTCCAAATTGTATGGTGCTGGTCCCTTGCGAATCCTGCCA
GAGATATCGTAATGAGAACCATGGCAAGGGCAAAACCATCCACCAAAGTC
ACCAGCATTTGGCAAAGGAATGCAACCAAGATGTGTGCAGACCCCAACAA
CTACAAGCCACTCCGGGTTTTTAACCCTCTCAGCGTCTTGCTGAGGATCA
CGAAGAGATCCCAAATCAACACTGTTGGCCAGCTTGATATCTTCCTCAGT
CCGACGTCTGATGAAAACTGGCTTGCCCCGCCACTTAACAGTCACTGTGC
TGCCTGGCTCAATGCTGGACAGATCAACCTCAAGAGAGGCCATAGCAAGA
ACATCCTTACTCGCTGACATGCTCAGTACAAATTTAAGGATAAGTAGACG
GATGAGTGAAGCATACACAAACCTACCACCAGTCAGGACAAAGT
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