CX046848

Overview
NameCX046848
Unique NameCX046848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: MNHD1_STAA3 (Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus aureus (strain USA300) GN=mnhD1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 52/205 (25.37%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFL-SIAPKISISANISRVFIYGSYGATLQQ-IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYAL--MTIDAFAIVLALRQTRVKYIADL---GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRL 642
            +++W P  Y   P P+ AF  ++  K+ + A    + ++ S   +    +  F ++ ++I G + A+A   +K+++ ++ +  VG I  G +  T  G    +IG   Y L  M +     +L     ++   ADL   G L K  P+   +F I   S AGIPPL+GF  KF++  +    G Y    + +++S++  ++  R+
Sbjct:  229 MFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESG----MIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRI 429          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: MNHD1_STAA2 (Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus aureus (strain JH1) GN=mnhD1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 52/205 (25.37%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFL-SIAPKISISANISRVFIYGSYGATLQQ-IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYAL--MTIDAFAIVLALRQTRVKYIADL---GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRL 642
            +++W P  Y   P P+ AF  ++  K+ + A    + ++ S   +    +  F ++ ++I G + A+A   +K+++ ++ +  VG I  G +  T  G    +IG   Y L  M +     +L     ++   ADL   G L K  P+   +F I   S AGIPPL+GF  KF++  +    G Y    + +++S++  ++  R+
Sbjct:  229 MFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESG----MIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRI 429          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: MNHD1_STAA1 (Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=mnhD1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 52/205 (25.37%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFL-SIAPKISISANISRVFIYGSYGATLQQ-IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYAL--MTIDAFAIVLALRQTRVKYIADL---GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRL 642
            +++W P  Y   P P+ AF  ++  K+ + A    + ++ S   +    +  F ++ ++I G + A+A   +K+++ ++ +  VG I  G +  T  G    +IG   Y L  M +     +L     ++   ADL   G L K  P+   +F I   S AGIPPL+GF  KF++  +    G Y    + +++S++  ++  R+
Sbjct:  229 MFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESG----MIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRI 429          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU5C_RANMC (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Ranunculus macranthus GN=ndhF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 51/173 (29.48%), Postives = 90/173 (52.02%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFLSIAPKISISAN-ISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTIDAFAIVLALRQT------RVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSK 543
            L++W PD  EG PTP++A +  A  ++     ++R+F   +    +  I     I +++LGA  A+AQ  +KR LA+S++  +GYI      G+    +  L+   +  AL+ + + +I+ ++         + + +A +G L K  PI+  +F +   S  GIPPLA F SK
Sbjct:  246 LHVWLPDAMEG-PTPISALIHAATMVAAGIFLVARLFPLFTVIPYIMNIIALVGIITLLLGATLALAQRDIKRSLAYSTMSQLGYIMLALGMGSYRAALFHLITHAYSKALLFLGSGSIIHSMENVVGYSPDKSQNMALMGGLTKYAPITKTSFLLGTLSLCGIPPLACFWSK 417          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU5C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Chaetosphaeridium globosum GN=ndhF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFLSIAPKISISAN-ISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTIDAFAIVLALR------QTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSK 543
            L++W PD  EG PTP++A +  A  ++     ++R+         L  +  F    + +LGA  A+AQT +KR LA+S++  +GY+  G   G  +  I  L+   +  AL+ + + +++ ++         + + I  +G L K  PI+ +TF I   S  GIPP A F SK
Sbjct:  246 LHIWLPDAMEG-PTPISALIHAATMVAAGIFLVARLLPIFQLSPLLMILIAFTGAITALLGACLAVAQTDLKRGLAYSTMSQLGYMMLGLGIGGYQAAIFHLITHAYSKALLFLGSGSVIHSMEPVVGYDPNKSQNIDYMGGLRKYMPITGVTFLIGTLSLCGIPPFACFWSK 417          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: MNHD2_STAHJ (Putative antiporter subunit mnhD2 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mnhD2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 50/212 (23.58%), Postives = 97/212 (45.75%), Query Frame = 1
Query:   28 GSISLLTLYMWAPDIYEGSPTPVTA-FLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLI----GIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRL 642
            GS + L L+MW P  Y    T + A F ++  K+   A I R F  ++  +      +  F S  +M++GA   +A   +K++ ++  I  +G++  G    T  G+   +      I +  ++     ++V        KY+     LAK  P   + F + +F+  G+PP +GF  K  +F  A+  G +    + ++TS++  ++  R+
Sbjct:  218 GSKAALVLFMWLPKAYAVLNTELAALFAALMTKVGAYALI-RFFTLLFDQHTGVTHPLLVFMSCITMLIGAFGVIAYRDIKKVASYQVILSIGFVILGLGSNTFAGVHGAIFYLANDIIVKTMLFFIIGSLVYMSGYREYKYLC---GLAKKEPFFGVAFVVMIFAIGGVPPFSGFPGKVLIFQGAIENGNFIGLALMIITSLLAMYSLFRI 425          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU5C_CARCG (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Carpenteria californica GN=ndhF PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 55/177 (31.07%), Postives = 92/177 (51.98%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFLS----IAPKISISANISRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTI-EGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAD-------LGALAKTNPISAITFSITMFSYAGIPPLAGFCSK 543
            L++W PD  EG PTP++A +     +A  I + A +  +FI   Y   +  +  F  I +++LGA  A+AQ  +KR LA+S++  +GY+      G+    +  L+   +  AL+ + + +++ ++ +T V Y  D       +G L K  PI+   F +   S  GIPPLA F SK
Sbjct:  246 LHVWLPDAMEG-PTPISALIHAATMVAAGIFLVARLLPLFIVIPY---ILNLISFIGIITLLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYPKALLFLGSGSVIHSM-ETVVGYSPDKSQNMVLMGGLTKHVPITKTAFFLGTLSLCGIPPLACFWSK 417          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUOM_RICPR (NADH-quinone oxidoreductase subunit M OS=Rickettsia prowazekii GN=nuoM PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 54/199 (27.14%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   40 LLTLYMWAPDIYEGSPTPVTAFLS-IAPKISISANISRVFIYGSYGATLQQIFF--FCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKF--YLFFAALGCGAYFLAPVGVVTSVI 618
            ++  + W PD +  +PT  +  L+ I  K+       RV +     A+ +   +  + S+ ++I  +L A+AQ  +K+++A+SSI H+GY+  G    T  GI   +  +  + +++   F IV  L  +   K IA  G +A   PI A  F I M S  G+P  +GF  +F   L    +     F+A +G++   +
Sbjct:  229 MIPFHTWLPDAHVQAPTTGSVILAGILLKLG-GYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQKDIKQMIAYSSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNVVTAFIAALGIILGAV 426          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NUOM_RICBR (NADH-quinone oxidoreductase subunit M OS=Rickettsia bellii (strain RML369-C) GN=nuoM PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 56/201 (27.86%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   34 ISLLTLYMWAPDIYEGSPTPVTAFLS-IAPKISISANISRVFIYGSYGATLQQIFF--FCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKF--YLFFAALGCGAYFLAPVGVVTSVI 618
            I ++  + W PD +  +PT  +  L+ I  K+       RV +     A+ +   +  + S+ ++I  +L A+AQ  +K+++A+SSI H+GY+  G    T  G+   L  +  + +++   F IV  L  +   K IA  G +A   P+ A  F I M    G+P  +GF  +F   L    +   A FLA +G++   I
Sbjct:  229 IPMIPFHTWLPDAHVQAPTSGSVILAGILLKLG-GYGFLRVLLPLLPNASQEFAIYVIWLSVIAIIYASLVALAQKDMKKMIAYSSITHMGYVTIGIFSFTDSGVSGALFQMLSHGIISSCLFLIVGTLYERLHTKEIAKYGGVASKMPVLATFFMIAMLGSVGLPGTSGFIGEFLSLLGIYKVNVIATFLAALGIILGAI 428          
BLAST of CX046848 vs. ExPASy Swiss-Prot
Match: NU5C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Piper cenocladum GN=ndhF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   49 LYMWAPDIYEGSPTPVTAFLS----IAPKISISANISRVFIYGSYGATLQQIFFFCS---IASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIE-GIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAD-------LGALAKTNPISAITFSITMFSYAGIPPLAGFCSK 543
            L++W PD  EG PTP++A +     +A  I + A +  +FI       L  I +F S   I +++LGA  A+AQ  +KR LA+S++  +GYI      G+    +  L+   +  AL+ + + +I+ ++ +  V Y  D       +G L K  PI+  TF +   S  GIPPLA F SK
Sbjct:  246 LHVWLPDAMEG-PTPISALIHAATMVAAGIFLVARLFPLFI------NLPYIMYFISLIGIITVLLGATLALAQRDIKRSLAYSTMSQLGYIMLAMGIGSYRAALFHLITHAYSKALLFLGSGSIIHSM-EPIVGYSPDKSQNMVLMGGLTKYVPITKTTFLLGTLSLCGIPPLACFWSK 417          
The following BLAST results are available for this feature:
BLAST of CX046848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNHD1_STAA31.235e-1325.37Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus... [more]
MNHD1_STAA21.235e-1325.37Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus... [more]
MNHD1_STAA11.235e-1325.37Na(+)/H(+) antiporter subunit D1 OS=Staphylococcus... [more]
NU5C_RANMC1.613e-1329.48NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NU5C_CHAGL1.613e-1330.06NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
MNHD2_STAHJ1.613e-1323.58Putative antiporter subunit mnhD2 OS=Staphylococcu... [more]
NU5C_CARCG2.107e-1331.07NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]
NUOM_RICPR3.593e-1327.14NADH-quinone oxidoreductase subunit M OS=Rickettsi... [more]
NUOM_RICBR3.593e-1327.86NADH-quinone oxidoreductase subunit M OS=Rickettsi... [more]
NU5C_PIPCE3.593e-1332.78NAD(P)H-quinone oxidoreductase subunit 5, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046848 ID=CX046848; Name=CX046848; organism=Citrus sinensis; type=EST; length=656bp
CCCCGAAGAAAACCCCCCTCCCTTTCGGGCTCCATATCTCTTTTGACTCT
ATATATGTGGGCACCTGATATCTATGAGGGTTCACCCACCCCGGTTACAG
CATTCCTTTCTATTGCGCCTAAAATATCTATTTCTGCTAATATTTCACGT
GTTTTTATTTATGGTTCCTATGGAGCTACATTGCAACAAATCTTCTTTTT
CTGCAGCATTGCTTCTATGATCTTAGGAGCACTGGCCGCCATGGCCCAAA
CGAAAGTAAAAAGACTTCTAGCTCATAGTTCAATTGGACATGTAGGTTAT
ATTCGTACTGGTTTCTCATGTGGAACCATAGAAGGAATTCAATCACTACT
AATTGGTATCTTTATTTATGCATTAATGACGATAGATGCATTCGCCATAG
TTTTAGCATTACGGCAAACCCGTGTCAAATATATAGCGGATTTGGGCGCT
CTAGCCAAAACGAATCCTATTTCGGCTATTACCTTCTCCATTACTATGTT
CTCATACGCGGGAATACCCCCGTTAGCCGGCTTTTGTAGCAAATTCTATT
TGTTCTTCGCCGCTTTGGGTTGTGGGGCTTACTTCCTAGCCCCAGTGGGA
GTAGTGACTAGCGTTATAGGTCGTTGGGCGGCCGGAAGGTTGCCACGAGT
AAGCCT
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