DN618447

Overview
NameDN618447
Unique NameDN618447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.430e-53
Identity = 104/164 (63.41%), Postives = 128/164 (78.05%), Query Frame = 2
Query:  131 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLD++DEMLSRGFK
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFK 200          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF413_TOBAC (Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.430e-53
Identity = 104/164 (63.41%), Postives = 128/164 (78.05%), Query Frame = 2
Query:  131 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLD++DEMLSRGFK
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFK 200          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.430e-53
Identity = 104/164 (63.41%), Postives = 128/164 (78.05%), Query Frame = 2
Query:  131 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLD++DEMLSRGFK
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFK 200          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.091e-53
Identity = 103/164 (62.80%), Postives = 128/164 (78.05%), Query Frame = 2
Query:  131 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D S  E QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLD++DEMLSRGFK
Sbjct:   37 EVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFK 200          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.210e-52
Identity = 103/160 (64.38%), Postives = 127/160 (79.38%), Query Frame = 2
Query:  143 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            SFDAMG++++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  + QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L+ GVHVV GTPGRV DM+KR++LR   IK+ VLD++DEMLSRGFK
Sbjct:   40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFK 199          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.063e-52
Identity = 96/162 (59.26%), Postives = 127/162 (78.40%), Query Frame = 2
Query:  137 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            I +FD M +K++LLRG+Y YGFE+PSAIQ RA++P+IKG DVIAQAQSGTGKT+  ++ + Q +D S + VQALIL+PTRELA Q +KV++A+GD++ I  HAC+GG +V ED+ KL  G  VV GTPGRV DMI R+  +T  +K+  LD++DEMLSRGFK
Sbjct:   37 IDNFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFK 198          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.063e-52
Identity = 95/163 (58.28%), Postives = 130/163 (79.75%), Query Frame = 2
Query:  131 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGF 619
            E   SFD+M +K +LLRG+Y YGFE+PSAIQQRA++PI+KG DVIAQAQSGTGKT+  +++  Q +D + +  QALI++PTRELA Q +KV++AIGDF+NIQ HAC+GG +V +D+  L  G  +V GTPGR+ DMI+R+ L+T  +K+ +LD++DEMLSRGF
Sbjct:   45 EITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGF 207          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.063e-52
Identity = 95/159 (59.75%), Postives = 130/159 (81.76%), Query Frame = 2
Query:  143 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGF 619
            SFD+M +K +LLRG+Y YGFE+PSAIQQRA+MPIIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALI++PTRELA Q +KV++AIGDF+NI  HAC+GG ++ +D++ L+ G  +V GTPGR+ DMI+R+ L+T  +KL +LD++DEMLSRGF
Sbjct:   24 SFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGF 182          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.695e-52
Identity = 102/164 (62.20%), Postives = 126/164 (76.83%), Query Frame = 2
Query:  131 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            E   SFDAMG+K++LLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     + Q +D    + QAL+L+PTRELA Q EKV+ A+GD++ ++ HACVGG SV ED R L  GVHVV GTPGRV DM++R++LR   IK+ VLD++DEMLSRGFK
Sbjct:   37 EVYHSFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFK 200          
BLAST of DN618447 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.519e-52
Identity = 103/164 (62.80%), Postives = 127/164 (77.44%), Query Frame = 2
Query:  131 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDDSDEMLSRGFK 622
            E   SFDAM ++ DLLRGIY YGFEKPSAIQQR ++P  KG DVI QAQSGTGKT+     V Q +D S  + QAL+L+PTRELA Q EKV+ A+GD++ ++A ACVGG SV ED R L+ GVHVV GTPGRV D+++R++LR  AIK+ VLD++DEMLSRGFK
Sbjct:   38 EVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFK 201          
The following BLAST results are available for this feature:
BLAST of DN618447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF414_TOBAC5.430e-5363.41Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF413_TOBAC5.430e-5363.41Eukaryotic initiation factor 4A-13 (Fragment) OS=N... [more]
IF410_TOBAC5.430e-5363.41Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF411_TOBAC7.091e-5362.80Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A1_ARATH1.210e-5264.38Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A_USTMA2.063e-5259.26ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_EMENI2.063e-5258.28ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_ASPTN2.063e-5259.75ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A9_TOBAC2.695e-5262.20Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF4A3_ARATH3.519e-5262.80Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618447 ID=DN618447; Name=DN618447; organism=Citrus sinensis; type=EST; length=624bp
ATTCTTTGATTTCGAAGAGTAGTTGTTGCGAATTTCGTGCGAGATGGCGG
CGGCGACGGCTATGCGGAGGAGAGGAGGGGGCGGCGGAATGGATGACGAC
AAGATGGTGTTCGAAACAACGGAAGGAGTGGAGGCAATCACGAGCTTCGA
CGCAATGGGAATAAAAGACGATCTGTTGCGTGGAATTTATCAGTACGGAT
TCGAGAAGCCATCGGCCATACAACAGAGGGCCGTTATGCCAATAATAAAG
GGCCGTGATGTAATTGCACAGGCCCAGTCTGGTACTGGCAAGACCTCTAT
GATTGCCCTAACTGTTTGCCAGACGGTCGATACTTCTAGCAGAGAGGTGC
AGGCGTTGATTTTGTCACCTACGAGGGAGTTGGCGACGCAGACAGAGAAA
GTGATTTTGGCAATTGGTGATTTTATTAACATACAAGCACATGCGTGTGT
TGGAGGCAAAAGTGTCGGGGAAGATATTAGGAAGTTAGAGCATGGAGTTC
ATGTGGTGTCTGGAACTCCGGGTAGAGTCTGTGATATGATTAAGAGGAAA
ACTTTGCGTACTAGAGCTATTAAATTATTGGTGCTTGATGATTCTGATGA
GATGCTGAGCAGAGGGTTCAAGGA
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