DN618446

Overview
NameDN618446
Unique NameDN618446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: DED1_YARLI (ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica GN=DED1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  374 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDI 634
            S+HGD  Q++R+  +  FR GTT +L+ T V ARGLD+  V+ V+NYDLP + + Y+HRIGR+GR G  G+A  F    +  I+R++
Sbjct:  447 SIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGIVREL 533          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  371 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-KNDDIKILRDIE 634
            S+HGD  Q ER++ +  FR G   VL+ TDV ++GLD  ++  VIN+D+P   E YIHRIGR+GR G KGVA  F+ KN+   +L D++
Sbjct:  503 SIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLK 591          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: RRP3_ENCCU (ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon cuniculi GN=RRP3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 39/100 (39.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  335 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPM 634
            ++HG++ Q++R+  M  F+     VL+ TD+ +RGLD+  V LVIN+D+P + + YIHR+GR+ R GR G AI  V   D++ ++ IE     +++E  M
Sbjct:  268 ALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIEFTLEKKLEEFKM 367          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: PRP5_NEOFI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp5 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            S+HG   Q +RD+ + +F++G   +LI T V ARGLDV+Q+ LV+NYD PN+ E Y+HR GR+GR G  G A+ F+  +  +   DI +       ++P  V  ++
Sbjct:  838 SIHGGKDQIDRDSTIEDFKAGIFPILIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKALRQSGQKVPEPVQKMV 943          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  338 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 634
            ++HGD  Q+ER+  +  FRSG   +L+ T V ARGLD+  V+ VINYDLP + + Y+HRIGR+GR G  G+A  F    +  ++RD+         E+P
Sbjct:  477 AIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVP 575          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  338 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMP 634
            ++HGD  Q+ER+  +  FRSG   +L+ T V ARGLD+  V+ VINYDLP + + Y+HRIGR+GR G  G+A  F    +  ++RD+         E+P
Sbjct:  478 AIHGDRTQRERERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVP 576          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  371 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 631
            +HGD+ Q +R  ++ +F++    +L+ TDV ARGLD+  VS V N+D+P + E Y HRIGR+GR G++G+A+ FV   ++  +R IE
Sbjct:  270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  371 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 631
            +HGD+ Q +R  ++ +F++    +L+ TDV ARGLD+  VS V N+D+P + E Y HRIGR+GR G++G+A+ FV   ++  +R IE
Sbjct:  270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  371 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 631
            +HGD+ Q +R  ++ +F++    +L+ TDV ARGLD+  VS V N+D+P + E Y HRIGR+GR G++G+A+ FV   ++  +R IE
Sbjct:  270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  371 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIE 631
            +HGD+ Q +R  ++ +F++    +L+ TDV ARGLD+  VS V N+D+P + E Y HRIGR+GR G++G+A+ FV   ++  +R IE
Sbjct:  270 LHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIE 356          
The following BLAST results are available for this feature:
BLAST of DN618446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DED1_YARLI1.115e-1645.98ATP-dependent RNA helicase DED1 OS=Yarrowia lipoly... [more]
DDX41_DICDI1.115e-1648.31Probable ATP-dependent RNA helicase ddx41 OS=Dicty... [more]
RRP3_ENCCU1.456e-1639.00ATP-dependent rRNA helicase RRP3 OS=Encephalitozoo... [more]
PRP5_NEOFI1.456e-1639.62Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DED1_ASPOR1.456e-1642.42ATP-dependent RNA helicase ded1 OS=Aspergillus ory... [more]
DED1_ASPNC1.456e-1642.42ATP-dependent RNA helicase ded1 OS=Aspergillus nig... [more]
Y2316_STAA81.901e-1643.68Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]
Y2168_STAAR1.901e-1643.68Probable DEAD-box ATP-dependent RNA helicase SAR21... [more]
Y2081_STAAM1.901e-1643.68Probable DEAD-box ATP-dependent RNA helicase SAV20... [more]
Y2072_STAAC1.901e-1643.68Probable DEAD-box ATP-dependent RNA helicase SACOL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618446 ID=DN618446; Name=DN618446; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTCAAAAAAGGTTAAAATAACTTGAATTCAACAGT
GAACAAATCGCCACCCTTAAAATCACGTCAAGGTGCAAAAGGCAATCACT
AGAATCTTATCACAAATGTTAATGCCTACTCTCTTCTCTTTTCTTGTCAT
CAATACCATACAGAATATGAGAACATCCTGTATTATACAAACTCCTCACA
AAAAAAAAAGACAATGTCACACTTGCAGAAACTGTCAATCACACAATTGT
CTTCAACCTTTCATTGATCAATCCCATAACCTCCACTCTGGCAGACGAGA
TCACAAACATCTCTTATATCAAATCAGCAACATTCATCGGCATTTCATCA
ATCTGGGTACTGTAATATTGCTCGATATCTCTAAGAATCTTGATATCATC
GTTTTTGACAAAATTTATTGCTACACCCTTGCGTCCAAAACGTCCAGAAC
GACCAATCCGGTGAATATAAAGCTCACGATTGTTAGGAAGGTCATAATTT
ATCACCAAAGAAACCTGCTGAACATCAAGTCCTCGTGCCCAAACATCAGT
TGTGATGAGCACACGGGTTGTCCCAGACCGAAATTCTCCCATAATTGCAT
CTCTTTCCTTCTGAGGCATGTCTCCATGCATTGA
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