DN618446

Overview
NameDN618446
Unique NameDN618446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAIN V  +D + LRDIE +Y+T I+EMP+NVADLI
Sbjct:  301 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAIN V  +D + LRDIE +Y+T I+EMP+NVADLI
Sbjct:  301 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAIN V  +D + LRDIE +Y+T I+EMP+NVADLI
Sbjct:  301 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAIN V  +D + LRDIE +Y+T I+EMP+NVADLI
Sbjct:  301 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAIN V  +D + LRDIE +Y+T I+EMP+NVADLI
Sbjct:  301 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.446e-40
Identity = 78/106 (73.58%), Postives = 95/106 (89.62%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM Q++R+ IM +FRSG++RVLITTD+ ARG+DVQQVSLVINYDLP+NRE YIHRIGR GRFGRKGVAINF+ +DD +IL+DIEQ+Y T I+EMP N+ADLI
Sbjct:  298 AMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADLI 403          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 78/106 (73.58%), Postives = 95/106 (89.62%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM Q+ER+ IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP+++E YIHRIGR GRFGRKGVAINFV N+D  +L +IE YY+TQ++EMP+NVADLI
Sbjct:  296 AMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIETYYNTQVEEMPLNVADLI 401          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 79/103 (76.70%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  326 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVA 634
            +MHGDM Q +RD IM EFRSG++RVLI TD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGVAINFV  DD++++R+IEQ+YSTQI+EMPMNVA
Sbjct:  293 AMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVA 395          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            +MHGDM QKERD IM EFRSG++RVLITTD+ ARG+DVQQVSLVINYDLP NRE YIHRIGR GRFGRKGV IN V  +D + LRDIE +Y+T I+EMP+NVADLI
Sbjct:  301 AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVTINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406          
BLAST of DN618446 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 76/106 (71.70%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  317 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 634
            SMHGDM Q ERD+IM +FR+G +RVLI+TDVWARG+DVQQVSLVINYDLP ++E YIHRIGRSGRFGRKGVAIN +  +D+  LRD E+YYST+I EMPMN+ D++
Sbjct:  294 SMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM 399          
The following BLAST results are available for this feature:
BLAST of DN618446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_PONAB1.107e-4076.42Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A1_MOUSE1.107e-4076.42Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA1.107e-4076.42Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN1.107e-4076.42Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN1.107e-4076.42Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_DROME1.446e-4073.58Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_CRYNE2.466e-4073.58ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_ASPFU2.466e-4076.70ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A1_PANTR3.220e-4075.47Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
FAL1_PICST3.220e-4071.70ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618446 ID=DN618446; Name=DN618446; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTCAAAAAAGGTTAAAATAACTTGAATTCAACAGT
GAACAAATCGCCACCCTTAAAATCACGTCAAGGTGCAAAAGGCAATCACT
AGAATCTTATCACAAATGTTAATGCCTACTCTCTTCTCTTTTCTTGTCAT
CAATACCATACAGAATATGAGAACATCCTGTATTATACAAACTCCTCACA
AAAAAAAAAGACAATGTCACACTTGCAGAAACTGTCAATCACACAATTGT
CTTCAACCTTTCATTGATCAATCCCATAACCTCCACTCTGGCAGACGAGA
TCACAAACATCTCTTATATCAAATCAGCAACATTCATCGGCATTTCATCA
ATCTGGGTACTGTAATATTGCTCGATATCTCTAAGAATCTTGATATCATC
GTTTTTGACAAAATTTATTGCTACACCCTTGCGTCCAAAACGTCCAGAAC
GACCAATCCGGTGAATATAAAGCTCACGATTGTTAGGAAGGTCATAATTT
ATCACCAAAGAAACCTGCTGAACATCAAGTCCTCGTGCCCAAACATCAGT
TGTGATGAGCACACGGGTTGTCCCAGACCGAAATTCTCCCATAATTGCAT
CTCTTTCCTTCTGAGGCATGTCTCCATGCATTGA
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