DN618439

Overview
NameDN618439
Unique NameDN618439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.469e-23
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  289 HSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPAD------GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            H D     ++    E E D       K+FFAP +       A     SF E NLSRP+LR   A+ ++ PTPIQ   IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct:  256 HPDDVASDNDGSDIESEVDAEEEAKRKAFFAPEEQTSEQSAAELSKKSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 372          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_SCLS1 (ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=drs1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  289 HSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPAD----GASFHANS-FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            H D    +  D   + ++D   A   ++FFAP +    GA    NS F  ++LSRP+LR    +G+++PTPIQ+  IP+AL G+D+ G A+TGSGKTAAF +P LERLLYRPK++P
Sbjct:  223 HPDDAASEASDDDEDIDEDPEEAAKREAFFAPEEKPVKGAKPELNSTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLYRPKKVP 338          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  280 DNDHSDSELDQHEDYKPEDEDDFSNAGDT------KSFFAP--------ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            DND   + +   ED   +++ D  +  D       K+FFAP        ADGA     SF E NLSRP+LR   A+ ++ PTPIQ   IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct:  250 DNDSVATPVGHPEDEASDNDSDAESEIDAEEQEKRKAFFAPEEEKTKEQADGAQ---RSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 374          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX27_HUMAN (Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  280 DNDHSDSELDQHE-DYKPEDEDDFSNAGDTK---------------SFFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            +ND   SE +  E DY   DE+  + A   K                FF   D + +  N SF ++NLSRPLL+A  A+G+ +PTPIQ ACIP+ L G+DIC  A TG+GKTAAFALP LERL+Y+P++ P
Sbjct:  160 ENDEEGSEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAP 288          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  187 ESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDED---DFSNAGD---TKS--------------------FFAPADGASFHAN-SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            E +     +R+T   + K  KS +++          + +L++ +    EDE+   D+S+A +   TK+                    FF   D + +  N SF ++NLSRPLL+A  A+G+ +PTPIQ ACIP+ L G+DIC  A TG+GKTAAFALP LERL+Y+P++ P
Sbjct:   88 EKIEKVRKKRKTEDKEAKSGKSEKEKEAKEGSEPEEEEDLERKDVEASEDEESETDYSSADENILTKADTLKIKERKKKKKKGQEAGGFFE--DASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAP 257          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_ASPNC (ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=drs1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  265 SVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA------NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            + P++  D   S+ D  E+ + + E++       K+FFAP +  +  +       SF E NLSRP+LR    + +S PTPIQ   IP+AL G+DI GSA+TGSGKTAAF +P LERLL+RP+++P
Sbjct:  259 ATPVMHPDDIASDRDSDEESQVDAEEEEKR----KAFFAPEEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVP 379          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 55/132 (41.67%), Postives = 83/132 (62.88%), Query Frame = 1
Query:  244 TKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDF---SNAGDTKSFFAP----ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            TK  +Q      D+D ++ E ++  D   ED+D+      A +  SF+AP    ++  S   ++F  L LSRP+L+    LGY+KP+PIQ+A IP+ L+G+DI   A+TGSGKTAAF +P +ERLLY+P ++
Sbjct:  169 TKKNEQEEAGDEDDDDNEEEEEEEVDDDKEDDDEEREEDTAEEMASFYAPESESSEATSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKV 300          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX27_MOUSE (Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus GN=Ddx27 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.009e-22
Identity = 55/126 (43.65%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  280 DNDHSDSELDQHEDYKPEDEDDFSNAGDTK--------------SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR 615
            +++    + D   DY  EDE+  + A   K               FF  A      + SF ++NLSRPLL+A  A+G+ +PTPIQ ACIP+ L G+DIC  A TG+GKTAAFALP LERL+Y+P++
Sbjct:  128 EDEAGSKDEDSETDYSSEDEEILTKADTLKVKEKKKKKKGQAAGGFFEDASEYD-KSLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQ 252          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.116e-21
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  280 DNDHSDSELDQHEDYKPEDEDDFSNAGDTKS----FFAPADGASFHAN----SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            ++D    E D  E+Y   D++D     DT      F+A  + A+        +F  L LSRP+L+    LGY+KP+PIQ+ACIP+AL G+DI   A+TGSGKTAA+ +P +ERLLY+P +I
Sbjct:  207 EDDDEGVEADMDEEYPGSDQEDEKPVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKI 327          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 57/153 (37.25%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  178 AYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHA-----NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIP 621
            A ++  SD+         D +        + P+   D  D   D+  D + ED ++ +      +FFAP +  +        ++F   NLSRP+LR   A+G+S PTPIQ   IP+ L G+D+ G A+TGSGKTAAF +P LERLLYRP+++P
Sbjct:  242 ANADKGSDDESMPDANGADEEDASDSDSVASPVAHPD--DLRSDESSDSEEEDPEEVAKRN---AFFAPEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILERLLYRPRKVP 389          
The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
DRS1_ASPOR3.469e-2347.01ATP-dependent RNA helicase drs1 OS=Aspergillus ory... [more]
DRS1_SCLS14.530e-2346.55ATP-dependent RNA helicase drs1 OS=Sclerotinia scl... [more]
DRS1_ASPTN4.530e-2346.88ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]
DDX27_HUMAN7.728e-2345.80Probable ATP-dependent RNA helicase DDX27 OS=Homo ... [more]
DDX27_BOVIN1.009e-2237.21Probable ATP-dependent RNA helicase DDX27 OS=Bos t... [more]
DRS1_ASPNC1.722e-2244.00ATP-dependent RNA helicase drs1 OS=Aspergillus nig... [more]
DRS1_VANPO2.936e-2241.67ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma... [more]
DDX27_MOUSE5.009e-2243.65Probable ATP-dependent RNA helicase DDX27 OS=Mus m... [more]
DRS1_DEBHA1.116e-2143.80ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
DRS1_COCIM1.903e-2137.25ATP-dependent RNA helicase DRS1 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bp
CAGCGAAGCTAAGTCAAGCTTGTTGCGTTAGAATCCATGGATTCAGGTTT
CATATTCGAACCGCCCAGCGATGAAGAAATTGAAGAGCCGCAGTCGGAAT
ACGAAGAAGATCAAGGAGAAGAAGTAGATGTAGAGAAACCATCAAAACGG
GCAAAGCAATCCCCTTGGGACTTCGCTGCATACTCCGAATCCGTCTCCGA
TGAACACTTTCGTCGCAGGACAACATCCGTCGATTTTAAAATCACCAAAT
CCCTCCAACAGCGCTCCGTCCCCATTGTCGACAACGACCACTCCGATTCT
GAACTTGACCAACATGAGGATTACAAACCTGAAGATGAAGATGATTTTAG
TAATGCTGGTGACACTAAATCATTTTTTGCGCCAGCCGATGGAGCCTCCT
TTCATGCTAATTCATTCATGGAGCTCAATTTATCTCGTCCTCTGCTTCGT
GCTTGTGAGGCATTGGGCTACTCTAAGCCCACACCAATTCAGGCGGCGTG
CATACCATTAGCTTTGACTGGTCGCGATATTTGTGGGAGTGCAATTACTG
GTTCTGGAAAGACGGCTGCCTTTGCATTACCCACACTGGAGAGGCTTCTA
TACCGTCCAAAGCGTATTCCAGCT
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