DN618439
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: PRP28_NEUCR (Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa GN=prp-28 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 588 S+ E L R LL + +GY +PTPIQ A IP+AL RD+ G A+TGSGKTAAF LP L Sbjct: 294 SWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL 352
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 588 S+ E NL + L+ +GY +PTPIQ A IP+A+ RD+ G A+TGSGKTAAF LP L Sbjct: 373 SWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLL 431
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: PRP28_ASPCL (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus GN=prp28 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 S+ E L + LL + +GY +PTPIQ A IP+AL RD+ G A+TGSGKTA+F LP L + P+ Sbjct: 367 SWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELPR 433
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX18_DICDI (Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum GN=ddx18 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1 Query: 136 KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 600 K K+ KQS E S ++ S + K + + + D + D E ++ E + E+E++ +N G+ G S + F L + ++ E +G+ K TPIQA I L G+D+ G+A TGSGKT AF +P +E L+ Sbjct: 32 KKVKQTKQSKAQAKEIQELASTPSVKQ-IQSQKVLVPKLEETKPITPPDQEEEDQEEEEQEQEEEENENNDNNTGNVSE---KELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLV 182
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DBP10_MAGGR (ATP-dependent RNA helicase DBP10 OS=Magnaporthe grisea GN=DBP10 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 1 Query: 358 GDTKSFFAPADGASFH------------ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624 GD ++ A ASF + F + L+ LL+A G++ PTPIQ IPL L RD+ G A TGSGKTAAF +P +ERL R+ A Sbjct: 61 GDDEALIALQQAASFRKTTNLKGKTGKKSGGFQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGA 161
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DBP10_LODEL (ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 37/96 (38.54%), Postives = 49/96 (51.04%), Query Frame = 1 Query: 319 DYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 606 D++ ED ++ + + A SF S+ LL GY +PTPIQ IPL + RD+ G A TGSGKTAAF LP +E+L R Sbjct: 91 DFEAEDNEEEDKTLSSILALSNPTAKKAKAGSFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLKLR 186
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 +F + NLS L++A +G+ + TPIQA IPL L+ +D+ G A TG+GKTAAF +P +E++ Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI 65 The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bpback to top |