DN618439

Overview
NameDN618439
Unique NameDN618439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: PRP28_NEUCR (Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa GN=prp-28 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 588
            S+ E  L R LL   + +GY +PTPIQ A IP+AL  RD+ G A+TGSGKTAAF LP L
Sbjct:  294 SWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLL 352          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL 588
            S+ E NL + L+     +GY +PTPIQ A IP+A+  RD+ G A+TGSGKTAAF LP L
Sbjct:  373 SWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLL 431          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: PRP28_ASPCL (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus GN=prp28 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            S+ E  L + LL   + +GY +PTPIQ A IP+AL  RD+ G A+TGSGKTA+F LP L  +   P+
Sbjct:  367 SWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELPR 433          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DDX18_DICDI (Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium discoideum GN=ddx18 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  136 KPSKRAKQSPWDFAAYSESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL 600
            K  K+ KQS        E  S    ++   S    + K  + + +   D +  D E ++ E  + E+E++ +N G+         G S  +  F  L +     ++ E +G+ K TPIQA  I   L G+D+ G+A TGSGKT AF +P +E L+
Sbjct:   32 KKVKQTKQSKAQAKEIQELASTPSVKQ-IQSQKVLVPKLEETKPITPPDQEEEDQEEEEQEQEEEENENNDNNTGNVSE---KELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLV 182          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DBP10_MAGGR (ATP-dependent RNA helicase DBP10 OS=Magnaporthe grisea GN=DBP10 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 1
Query:  358 GDTKSFFAPADGASFH------------ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624
            GD ++  A    ASF             +  F  + L+  LL+A    G++ PTPIQ   IPL L  RD+ G A TGSGKTAAF +P +ERL     R+ A
Sbjct:   61 GDDEALIALQQAASFRKTTNLKGKTGKKSGGFQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGA 161          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DBP10_LODEL (ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 37/96 (38.54%), Postives = 49/96 (51.04%), Query Frame = 1
Query:  319 DYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR 606
            D++ ED ++      +    +        A SF     S+ LL      GY +PTPIQ   IPL +  RD+ G A TGSGKTAAF LP +E+L  R
Sbjct:   91 DFEAEDNEEEDKTLSSILALSNPTAKKAKAGSFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLKLR 186          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            +F + NLS  L++A   +G+ + TPIQA  IPL L+ +D+ G A TG+GKTAAF +P +E++
Sbjct:    4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKI 65          
The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PRP28_NEUCR8.862e-1157.63Pre-mRNA-splicing ATP-dependent RNA helicase prp-2... [more]
PRP28_ASPNC8.862e-1154.24Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPCL8.862e-1149.25Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX18_DICDI8.862e-1129.68Probable ATP-dependent RNA helicase ddx18 OS=Dicty... [more]
DBP10_MAGGR8.862e-1139.60ATP-dependent RNA helicase DBP10 OS=Magnaporthe gr... [more]
DBP10_LODEL8.862e-1138.54ATP-dependent RNA helicase DBP10 OS=Lodderomyces e... [more]
CSHA_BACSU8.862e-1146.77DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bp
CAGCGAAGCTAAGTCAAGCTTGTTGCGTTAGAATCCATGGATTCAGGTTT
CATATTCGAACCGCCCAGCGATGAAGAAATTGAAGAGCCGCAGTCGGAAT
ACGAAGAAGATCAAGGAGAAGAAGTAGATGTAGAGAAACCATCAAAACGG
GCAAAGCAATCCCCTTGGGACTTCGCTGCATACTCCGAATCCGTCTCCGA
TGAACACTTTCGTCGCAGGACAACATCCGTCGATTTTAAAATCACCAAAT
CCCTCCAACAGCGCTCCGTCCCCATTGTCGACAACGACCACTCCGATTCT
GAACTTGACCAACATGAGGATTACAAACCTGAAGATGAAGATGATTTTAG
TAATGCTGGTGACACTAAATCATTTTTTGCGCCAGCCGATGGAGCCTCCT
TTCATGCTAATTCATTCATGGAGCTCAATTTATCTCGTCCTCTGCTTCGT
GCTTGTGAGGCATTGGGCTACTCTAAGCCCACACCAATTCAGGCGGCGTG
CATACCATTAGCTTTGACTGGTCGCGATATTTGTGGGAGTGCAATTACTG
GTTCTGGAAAGACGGCTGCCTTTGCATTACCCACACTGGAGAGGCTTCTA
TACCGTCCAAAGCGTATTCCAGCT
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