DN618439

Overview
NameDN618439
Unique NameDN618439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  280 DNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLY 603
            D D ++ E ++ E    ED D+F  + +T +       ++  + +F EL LSRP+L++ + LG++ PTP+QA+ IP+AL G+DI  SA TGSGKTAA+ +P +ERLLY
Sbjct:  158 DEDENEDEDEEEEVDTKEDLDNFYESQETNT-----SASALKSKTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLY 260          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 57/171 (33.33%), Postives = 87/171 (50.88%), Query Frame = 1
Query:  187 ESVSDEHFRRRTTSVDFKITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDE-------------------DDFSNAGDTKS----FFAPA----DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            E    E   +   S D ++         P+ + D + SE ++ E+ + E+E                   D+     D++     F+AP     +       +F  L+LSRP+L+   +LGY KP+PIQ+A IP+AL G+DI   A+TGSGKTAAF +P +ERLLY+P +I
Sbjct:  132 EETEKEKVEKENDSDDEELAMDGFGMGAPMNNGDENQSEEEEEEEEEEEEEEEEEEEEQEEMTLEKGGKDDEIDEEDDSEEAKADFYAPETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKI 302          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1
Query:  280 DNDH-SDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 624
            +N+H ++SE +Q ++    DED  +   +    F      +    SF  L LSRPLL+    LGY+ P+ IQAA IP+A+ G+DI   A+TGSGKTAA+ +P +ERL+Y+P  + A
Sbjct:  158 ENEHEAESEDEQEQEISENDEDSAAAIAE----FYEESKTTEKITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSA 269          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  286 DHSDSELDQHEDYKPE--DEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            D SD E +Q +  K     ED  + + D+ S     + A    +SF   +LSRP+LRA  +L + KPTPIQ+  IP+AL G+DI   A+TGSGKTAAF +PT+ERL +R K
Sbjct:  293 DDSDLETEQEKARKAAFFAEDPIATSADSSSKSKSTNDAE---SSFGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTWRAK 400          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 51/137 (37.23%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  238 KITKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN------------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            K    ++Q++    ++D  D + D+ E+ + +++D    A +        + A+                SF +L +  PL  ACEAL + KPTPIQ   IPLAL GRD+ G A TGSGKTAAFALP L+ LL +P+
Sbjct:   41 KAAAPIKQKAREAEEDDDDDDKDDKDEEDEEQNDDSSDEASENDDSTPTVEEATKEGQTELPSKEETPTKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQ 177          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  286 DHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 609
            DHSDSE      +    ED   N  + +    P++       SF EL L   L  AC+++GY  PT IQA  IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P
Sbjct:   18 DHSDSEA-----HSSASEDAAPNTTEQEQ--EPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP 118          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  292 SDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            SD E    E  +   ++  + A +                SF +L +   L  ACEALGY  PTPIQA  IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ +
Sbjct:   20 SDLESSSSEASQQSHDEQLTAANEQDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNKPQSL 128          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 46/103 (44.66%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  310 QHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRI 618
            Q E     + +  S+ G  K     +      A SF EL +   L  ACE +GY  PTPIQ+  IPLAL GRD+ G A TGSGKTAAFALP L+ L+  P+ +
Sbjct:   13 QPETNSDSEAESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTL 115          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  316 EDYKPEDEDDFSNAGDTKSFFAPADGASFHAN------------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 609
            ++ + E+E++     + K    P D A   A+            SF  L LSRP+L+    L ++KPTPIQ+A IP+AL G+DI   A TGSGKT A+ +P +ERLLY+P
Sbjct:   87 QEEEEEEEEEEVEVPEVKEVVEPEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKP 196          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_YEAST (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae GN=RRP3 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 57/127 (44.88%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  223 TSVDFKI-TKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            TS+  KI  K+L+ +   I       SE D  ED   E +    S +  T S             SF ELNL   L++AC+ L YSKPTPIQ+  IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct:   17 TSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143          
The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
DRS1_LODEL3.039e-1943.52ATP-dependent RNA helicase DRS1 OS=Lodderomyces el... [more]
DRS1_YEAS76.770e-1933.33ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_PICGU4.388e-1841.38ATP-dependent RNA helicase DRS1 OS=Pichia guillier... [more]
DRS1_USTMA5.731e-1845.95ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]
RRP3_MAGGR7.485e-1837.23ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]
RRP3_ASPOR1.081e-1646.30ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
RRP3_AJECN2.408e-1643.12ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
RRP3_EMENI4.107e-1644.66ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
DRS1_CANAL5.364e-1640.91ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
RRP3_YEAST1.195e-1544.88ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bp
CAGCGAAGCTAAGTCAAGCTTGTTGCGTTAGAATCCATGGATTCAGGTTT
CATATTCGAACCGCCCAGCGATGAAGAAATTGAAGAGCCGCAGTCGGAAT
ACGAAGAAGATCAAGGAGAAGAAGTAGATGTAGAGAAACCATCAAAACGG
GCAAAGCAATCCCCTTGGGACTTCGCTGCATACTCCGAATCCGTCTCCGA
TGAACACTTTCGTCGCAGGACAACATCCGTCGATTTTAAAATCACCAAAT
CCCTCCAACAGCGCTCCGTCCCCATTGTCGACAACGACCACTCCGATTCT
GAACTTGACCAACATGAGGATTACAAACCTGAAGATGAAGATGATTTTAG
TAATGCTGGTGACACTAAATCATTTTTTGCGCCAGCCGATGGAGCCTCCT
TTCATGCTAATTCATTCATGGAGCTCAATTTATCTCGTCCTCTGCTTCGT
GCTTGTGAGGCATTGGGCTACTCTAAGCCCACACCAATTCAGGCGGCGTG
CATACCATTAGCTTTGACTGGTCGCGATATTTGTGGGAGTGCAATTACTG
GTTCTGGAAAGACGGCTGCCTTTGCATTACCCACACTGGAGAGGCTTCTA
TACCGTCCAAAGCGTATTCCAGCT
back to top