DN618439

Overview
NameDN618439
Unique NameDN618439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 57/127 (44.88%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  223 TSVDFKI-TKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            TS+  KI  K+L+ +   I       SE D  ED   E +    S +  T S             SF ELNL   L++AC+ L YSKPTPIQ+  IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct:   17 TSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 50/130 (38.46%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  271 PIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN----------------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            P      S+ + D+   +  E+E+D S A  T    A AD  +  ++                +F +L +   L  ACE LGY   TPIQ   IPLAL G+DI G A TGSGKTAAF LP L+ LL +P+
Sbjct:   53 PSPPQSQSEEDEDEFGGFSGEEEEDVSRAKMTNGSTAKADAEAEQSDEEAEAQAAAAVEAPKKTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQ 182          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 50/110 (45.45%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  292 SDSE-LDQHEDYKPEDE--DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            SD+E    HE    +D+  +    A  T++  AP         SF +L +   L  ACE +GY  PTPIQA  IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+
Sbjct:   18 SDAESTSSHESVAQQDDTAETQDEAAATETRPAP--------KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQ 119          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR 615
            +F EL +   L  ACE LGY+ PTPIQ  CIP+AL GRD+ G A TGSGKTAAF LP L+ L+ +P++
Sbjct:   29 TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQ 96          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  271 PIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            P  ++D   S  +Q ++  PE ++     G +K+F               EL +   L  ACE +GY  PTPIQ   IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+
Sbjct:   18 PAQESDVESSTPEQTQE--PEAQEQEQEEGQSKTF--------------KELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQ 115          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  313 HEDYKPEDEDDFSNAGDTKSFFAPADG-----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            H   + E ED FS++  +++      G      +    SF +L +   L  AC++LGY  PT IQA  IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+
Sbjct:   11 HTPPQGEAEDGFSDSETSQASLQETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQ 115          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  328 PEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            P DED   SN+ D+ S   P +       SF EL+L   L+ AC+ L Y+KPTPIQ+  IP AL G DI G A TGSGKTAAFA+P L +L
Sbjct:   40 PSDEDSAQSNSKDSNSNEQPEESEEIF-ESFTELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL 129          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612
            SF +L +   L  ACE +GY  PTPIQA  IPLAL GRD+ G A TGSGKTAAFALP L+ L+  P+
Sbjct:   53 SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQ 119          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  289 HSDSELDQHEDYKPEDEDDFSNAGDTK----SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            +S++  DQ +D    +E++ S++ D +          +G +F   SF +L+L   L+ AC+ L ++KPTPIQA  IP AL G DI G A TGSGKTAAFA+P L RL
Sbjct:   44 NSETTSDQEDDPSESEEEEGSDSEDVEVSKDKQEEEEEGETFE--SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRL 148          
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 48/117 (41.03%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  247 KSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597
            K +Q  S    ++D SD E+++    + +DE              P +  +F   SF +LNL   L++AC+ L ++KPTPIQA  IP AL G D+ G A TGSGKTAAFA+P L +L
Sbjct:   31 KKMQAASRKDSESDSSDEEVERPAKKQAKDE----------KVEEPEEEVTFE--SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKL 135          
The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RRP3_YEAS71.195e-1544.88ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
RRP3_PHANO2.038e-1538.46ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
RRP3_NEOFI2.038e-1545.45ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RRP3_ASPTN3.477e-1557.35ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]
RRP3_ASPNC3.477e-1541.23ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
RRP3_COCIM4.541e-1543.81ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]
RRP3_KLULA5.931e-1551.65ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces ... [more]
RRP3_ASPFU5.931e-1559.70ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
RRP3_VANPO7.746e-1543.93ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozym... [more]
RRP3_CANGA7.746e-1541.03ATP-dependent rRNA helicase RRP3 OS=Candida glabra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02J04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bp
CAGCGAAGCTAAGTCAAGCTTGTTGCGTTAGAATCCATGGATTCAGGTTT
CATATTCGAACCGCCCAGCGATGAAGAAATTGAAGAGCCGCAGTCGGAAT
ACGAAGAAGATCAAGGAGAAGAAGTAGATGTAGAGAAACCATCAAAACGG
GCAAAGCAATCCCCTTGGGACTTCGCTGCATACTCCGAATCCGTCTCCGA
TGAACACTTTCGTCGCAGGACAACATCCGTCGATTTTAAAATCACCAAAT
CCCTCCAACAGCGCTCCGTCCCCATTGTCGACAACGACCACTCCGATTCT
GAACTTGACCAACATGAGGATTACAAACCTGAAGATGAAGATGATTTTAG
TAATGCTGGTGACACTAAATCATTTTTTGCGCCAGCCGATGGAGCCTCCT
TTCATGCTAATTCATTCATGGAGCTCAATTTATCTCGTCCTCTGCTTCGT
GCTTGTGAGGCATTGGGCTACTCTAAGCCCACACCAATTCAGGCGGCGTG
CATACCATTAGCTTTGACTGGTCGCGATATTTGTGGGAGTGCAATTACTG
GTTCTGGAAAGACGGCTGCCTTTGCATTACCCACACTGGAGAGGCTTCTA
TACCGTCCAAAGCGTATTCCAGCT
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