DN618439
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15 Identity = 57/127 (44.88%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 223 TSVDFKI-TKSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 TS+ KI K+L+ + I SE D ED E + S + T S SF ELNL L++AC+ L YSKPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L RL Sbjct: 17 TSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15 Identity = 50/130 (38.46%), Postives = 66/130 (50.77%), Query Frame = 1 Query: 271 PIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHAN----------------SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 P S+ + D+ + E+E+D S A T A AD + ++ +F +L + L ACE LGY TPIQ IPLAL G+DI G A TGSGKTAAF LP L+ LL +P+ Sbjct: 53 PSPPQSQSEEDEDEFGGFSGEEEEDVSRAKMTNGSTAKADAEAEQSDEEAEAQAAAAVEAPKKTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQ 182
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15 Identity = 50/110 (45.45%), Postives = 64/110 (58.18%), Query Frame = 1 Query: 292 SDSE-LDQHEDYKPEDE--DDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 SD+E HE +D+ + A T++ AP SF +L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ Sbjct: 18 SDAESTSSHESVAQQDDTAETQDEAAATETRPAP--------KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQ 119
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15 Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR 615 +F EL + L ACE LGY+ PTPIQ CIP+AL GRD+ G A TGSGKTAAF LP L+ L+ +P++ Sbjct: 29 TFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQ 96
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15 Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1 Query: 271 PIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 P ++D S +Q ++ PE ++ G +K+F EL + L ACE +GY PTPIQ IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ Sbjct: 18 PAQESDVESSTPEQTQE--PEAQEQEQEEGQSKTF--------------KELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQ 115
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15 Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 313 HEDYKPEDEDDFSNAGDTKSFFAPADG-----ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 H + E ED FS++ +++ G + SF +L + L AC++LGY PT IQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ +P+ Sbjct: 11 HTPPQGEAEDGFSDSETSQASLQETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQ 115
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15 Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 1 Query: 328 PEDEDDF-SNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 P DED SN+ D+ S P + SF EL+L L+ AC+ L Y+KPTPIQ+ IP AL G DI G A TGSGKTAAFA+P L +L Sbjct: 40 PSDEDSAQSNSKDSNSNEQPEESEEIF-ESFTELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL 129
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15 Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 412 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK 612 SF +L + L ACE +GY PTPIQA IPLAL GRD+ G A TGSGKTAAFALP L+ L+ P+ Sbjct: 53 SFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQ 119
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 289 HSDSELDQHEDYKPEDEDDFSNAGDTK----SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 +S++ DQ +D +E++ S++ D + +G +F SF +L+L L+ AC+ L ++KPTPIQA IP AL G DI G A TGSGKTAAFA+P L RL Sbjct: 44 NSETTSDQEDDPSESEEEEGSDSEDVEVSKDKQEEEEEGETFE--SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRL 148
BLAST of DN618439 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15 Identity = 48/117 (41.03%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 247 KSLQQRSVPIVDNDHSDSELDQHEDYKPEDEDDFSNAGDTKSFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 597 K +Q S ++D SD E+++ + +DE P + +F SF +LNL L++AC+ L ++KPTPIQA IP AL G D+ G A TGSGKTAAFA+P L +L Sbjct: 31 KKMQAASRKDSESDSSDEEVERPAKKQAKDE----------KVEEPEEEVTFE--SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKL 135 The following BLAST results are available for this feature:
BLAST of DN618439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618439 ID=DN618439; Name=DN618439; organism=Citrus sinensis; type=EST; length=624bpback to top |