CX046817

Overview
NameCX046817
Unique NameCX046817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.044e-27
Identity = 77/282 (27.30%), Postives = 145/282 (51.42%), Query Frame = 3
Query:   27 ALAGEKTLNPSFVRFQDERPKV----------AYNEFSNEIPVISLAGIDDVGGK---RAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAM-GLEK-EALTKACV----------DMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            +L+G   + P +VR  DER  +          A +  +  IPV+ ++   D   +   R E  + +  A  DWG+  +  HG+ A+L+  +    T FFALP ++K  +  D + G+  G+   ++++  G+  ++W + + +   P    D++ WP  P  ++  T+++  +   +A  LL +LS  + G ++ +AL KA            D+  ++ +NYYP+CPQP+L +G++ HTD   ++ +L + V GLQ    +G  W+T +   G  +V++GD
Sbjct:   18 SLSGLSAIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQ--REWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFILHNGVPGLQVL--HGARWVTARHEPGTIIVHVGD 295          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 80/258 (31.01%), Postives = 131/258 (50.78%), Query Frame = 3
Query:   30 LAGEKTLNPSFVRFQDERPKVAYNEFSNEIPVISLAG-IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSR---DY--SRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            L+G   +   F+  + E P     E    +P+I++ G +       AE+ + + EACE  G FQVV+HG+DA+L++D  R    FF +P  EK +     G+  G+  S   +      W+E +++ S P       DY  +   +      EV   Y  ++  ++ +++EVL E++G+ +    +     D  + +NYYP C +P  TLG   H DP ++T+L QD VGGLQ   +    W +++P   AFVVN+GD
Sbjct:   11 LSGRSDIPSQFIWPEGESPTPDAAE-ELHVPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEG--RWRSIRPRADAFVVNIGD 265          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 74/225 (32.89%), Postives = 115/225 (51.11%), Query Frame = 3
Query:  117 IPVISLAGIDDVGG-KRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKF-DMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            IP I L G D     KR    ++I EA   WG FQV++HGV  +L+  M +   +F     E + +F      ++  ++ +  L      +WR+  +    P    D  +  D PE   ++  EYS ++M +   L E+LSEA+GLE   L          ++ +YYP CP+PDLTLG  +H+D   +T+LL DQ+ GLQ  ++    W  V  + GA ++N+GD
Sbjct:   64 IPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFSCTMAP----DTPKPQDLPEICRDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQIEGLQVRREG--HWFDVPHVSGALIINIGD 282          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 78/238 (32.77%), Postives = 124/238 (52.10%), Query Frame = 3
Query:   78 ERPKVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSH--LQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            +R  V   +   +IPVI+L G+      R EI +KI EA E +G FQ+V+HG+   ++  M     +F     + K ++         F+ SS+  L   +  +WR+ +       Q  D   +PD      ++  +YS+ +  +   L E+LSEA+GL+   L +        ++ +YYP CPQP+LT G  +H+D G +T+L+QDQ+GGLQ   +N   WI V  I GA V+N+ D
Sbjct:   78 DRISVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIMNSNQP-DPQEFPDVCR---DILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLEN--QWIDVPFIPGALVINIAD 309          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.486e-27
Identity = 76/225 (33.78%), Postives = 110/225 (48.89%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSS---HLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            PVI L GID+   K  EI  K+ +A E WG FQVV+HG+   ++    +   +FF    E K ++      K     S+   +        WR+ +  +  P          + P    E   ++S  +  +   LLE+LSE +GL++  L             NYYP CPQP+LT+G  +HTD G +T+LLQD +GGLQ    N   W+ V P  G+ VVN+GD
Sbjct:   59 PVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAPNPPS----LQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQN--HWVDVPPTPGSLVVNIGD 277          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 73/229 (31.88%), Postives = 117/229 (51.09%), Query Frame = 3
Query:  117 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSR-WPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQK-----IVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            +P+I L+ I         +   +  AC  WG FQ+ +HGV ++L+ D+  L    F LP + KLK   S     G+ V+        K W E  T    P    D+ + WP     + E+ +EY + +  +A KL+     ++G+E++ +  A  + D +     I +N+YPKCP+PD  +GL  HTD   +T+L Q+   GLQ  +D+   W+T  P+ G+ VVN+GD
Sbjct:   50 LPLIDLSDI--------HVATLVGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLH--DFRKLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDD-VGWVTAPPVPGSLVVNVGD 267          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 81/226 (35.84%), Postives = 120/226 (53.10%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            P+I+L G++  G K     +KI +ACE+WG F++V HG+  + +  + RL  E +    E++ K  ++   KG   V + +      DW         PK   + S  PD  + +  V KE++ KL  +A +LL++L E +GLEK  L KA    +       V+ YP CP P+L  GL+ HTD G + LL Q D+V GLQ  KD    WI V P+  + V+NLGD
Sbjct:    5 PIINLEGLNGEGRKAT--MEKIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFKELVA--SKGLEAVKTEVND---MDWESTFYLRHLPKS--NISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDG--QWIDVPPMRHSIVINLGD 219          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 77/231 (33.33%), Postives = 126/231 (54.55%), Query Frame = 3
Query:  111 NEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKI-----VVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            +  PVI++  ++  G +RA   K I +ACE+WG F++V+H +  +L+ ++ RL  E +    E++ K  M+   +G  + ++ +      DW    T+F       + S  PD  +   +V KE+++KL  +A ++L++L E +GLEK  L  A       +      V+ YP CP+P+L  GL+ HTD G + LL Q D+V GLQ  KD    W+ V P+  + V+NLGD
Sbjct:    2 DSFPVINMEKLE--GQERAATMKLINDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELMASKVEGAVVDANDM------DWES--TFFIRHLPVSNLSEIPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDG--EWVDVPPMNHSIVINLGD 220          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 82/226 (36.28%), Postives = 124/226 (54.87%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQPDLTLGLKRHTDPGTITLLLQD-QVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            PVI +  ++  G +RA   +KI +ACE+WG F++V+HG+  +L+  + RL  E +    E++ K  ++   KG   V S +      DW    T+F       + S  PD  +   +  KE+++KL  +A +LL++L E +GLEK  L KA            V+ YP CP+P+L  GL+ HTD G I LL QD +V GLQ  KD    WI V P++ + V+N+GD
Sbjct:    5 PVIDMEKLN--GEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVA--TKGLEAVQSEIND---LDWES--TFFLRHLPVSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDG--EWIDVPPMKHSIVINIGD 219          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 80/226 (35.40%), Postives = 125/226 (55.31%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDM---DQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            PV+ L+ ++  G +RA   +KI +ACE+WG F++V+HG+  +L+  + ++  + +    E++ K  ++   KG   V S +      DW    T+F     S + S  PD  E + +  KE++ +L  +A KLL++L E +GLEK  L K        +    V+ YP CP+PDL  GL+ H+D G I LL Q D+V GLQ  KD    W+ V P+  + V+NLGD
Sbjct:    5 PVVDLSLVN--GEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTMEQRFKEMVAA--KGLDDVQSEIHD---LDWES--TFFLRHLPSSNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLLKDG--EWVDVPPMHHSIVINLGD 219          
The following BLAST results are available for this feature:
BLAST of CX046817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
LDOX_MAIZE2.044e-2727.30Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
GAO1A_WHEAT2.669e-2731.01Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
ACCH3_ARATH2.669e-2732.891-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO3.486e-2732.77Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH3_SOLLC3.486e-2733.781-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX2_ARATH4.553e-2731.88Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCO_PRUMU4.553e-2735.841-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO_PERAE4.553e-2733.331-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO_ACTDE4.553e-2736.281-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO1_MALDO5.947e-2735.401-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10D06-H11-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046817 ID=CX046817; Name=CX046817; organism=Citrus sinensis; type=EST; length=786bp
AATTCATGGCTCCTTCAACCCTCACCGCCCTTGCTGGGGAGAAAACCCTC
AACCCAAGCTTTGTCCGCTTTCAAGATGAGCGTCCCAAGGTGGCTTATAA
TGAATTCAGCAATGAAATTCCTGTGATTTCACTTGCTGGGATTGATGACG
TCGGTGGCAAAAGGGCTGAGATTTGCAAGAAAATTGTTGAGGCGTGTGAG
GACTGGGGAATCTTTCAAGTTGTTGATCATGGTGTTGATGCTAAGCTTAT
ATCCGATATGACTCGTCTTGCTACAGAATTTTTCGCCCTGCCCCCTGAGG
AGAAGCTCAAGTTTGATATGTCCGGTGGGAAGAAGGGTGGCTTCATTGTC
TCTAGCCACCTTCAGGGTGAAGTAGTAAAAGATTGGCGTGAAATAGTGAC
GTATTTCTCATTCCCAAAGCAAAGCCGAGATTACTCACGTTGGCCGGACA
AGCCAGAAGGCTGGATGGAAGTAACAAAAGAATACAGTGACAAATTAATG
GGAGTGGCGTGCAAGCTTCTGGAAGTTTTATCAGAGGCAATGGGATTGGA
GAAGGAAGCTTTGACCAAAGCATGTGTGGACATGGACCAAAAGATTGTTG
TCAATTACTATCCAAAATGCCCACAACCCGACCTCACTCTCGGACTCAAA
CGCCACACGGATCCGGGAACCATCACACTCTTGCTCCAAGATCAAGTTGG
TGGCCTCCAGGCTACCAAGGATAATGGTAAGACGTGGATCACCGTTCAAC
CTATTGAAGGTGCTTTTGTGGTCAATCTGGGTGATC
back to top