CX046817

Overview
NameCX046817
Unique NameCX046817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 80/258 (31.01%), Postives = 130/258 (50.39%), Query Frame = 3
Query:   30 LAGEKTLNPSFVRFQDERPKVAYNEFSNEIPVISLAG-IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSR---DY--SRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            L+G   +   F+  + E P     E    +P+I + G +       AE+ + + EACE  G FQVV+HG+DA+L++D  R    FF +P  EK +     G+  G+  S   +      W+E +++ S P       DY  +   +      EV   Y  ++  ++ +++EVL E++G+ +    +     D  + +NYYP C +P  TLG   H DP ++T+L QD VGGLQ   +    W +++P   AFVVN+GD
Sbjct:   11 LSGRADIPSQFIWPEGESPTPDAAE-ELHVPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEG--RWRSIRPRADAFVVNIGD 265          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 74/233 (31.76%), Postives = 122/233 (52.36%), Query Frame = 3
Query:  114 EIPVISLAG-IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQS------RDY--SRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            ++P+I LAG +       +E  + + +A    G F + +HGVD  L+S        FF  P  EK K     G+  G+  S   +      W+E +++   P++       +D+   +  D  E + +V +EY++ +  ++ K++E+L  ++G+E+    +   D D    +NYYP+C QP+L LG   H DP ++T+L QDQVGGLQ   DN   W ++ P   AFVVN+GD
Sbjct:   57 QVPLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLITNHGVDESLLSRAYLHMDSFFKAPACEKQKAQRKWGESSGYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFVDN--KWQSIPPNPHAFVVNIGD 287          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 82/259 (31.66%), Postives = 132/259 (50.97%), Query Frame = 3
Query:   30 LAGEKTLNPSFVRFQDERPKVAYNEFSNEIPVISLAGIDDVGGKRA--EICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSR---DY--SRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            L+G   +   F+  + E P     E    +P+I + G+   G  RA  E+ + + EACE  G FQVV+HG+DA+L++D  R    FF +P  EK +     G+  G+  S   +      W+E +++ S P       DY  +   +      EV   Y  ++  ++ +++EVL E++G+ +    +     D  + +NYYP C +P  TLG   H DP ++T+L QD VGGLQ   +    W +++P   AFVVN+GD
Sbjct:   11 LSGRADIPSQFIWPEGESPTPDAAE-ELHVPLIDIGGMLS-GDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEG--RWRSIRPRADAFVVNIGD 265          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 81/227 (35.68%), Postives = 127/227 (55.95%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQK---IVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            P+I+L  ++  G +RA+  + I +ACE+WG F++V+HG+  +++  + +L    +    E++ K  ++   KG       +Q EV   DW    T+F     + + S+ PD  E + EV ++++ +L  +A +LL++L E +GLEK  L  A            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  KD  + WI V P+  + VVNLGD
Sbjct:    5 PIINLENLN--GDERAKTMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVAS--KG----LEAVQAEVTDLDWES--TFFLRHLPTSNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD--EQWIDVPPMRHSIVVNLGD 219          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 87/255 (34.12%), Postives = 129/255 (50.59%), Query Frame = 3
Query:   30 LAGE--KTLNPSFVRFQDERPKVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            LAG+  K L   +VR + E   V   + S EIPVI L+ + D      E+ K    AC DWG FQ+++HGV  ++I  M     +FF LP +EK  +        G+  +     E   DW ++    + P Q R+   WP  P  + E  ++YS +L  VA  L  ++++ +GLE E LTK    +  +      P        LGL  H+D   +TLL+Q ++V GL   KD  + W+ ++PI GAFVVN+GD
Sbjct:   20 LAGKELKNLPNRYVRPELEHDDVVPIDNSLEIPVIDLSRLLDQQYACDELAK-FHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNR-EDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKD--EKWVPIKPILGAFVVNIGD 270          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 78/249 (31.33%), Postives = 126/249 (50.60%), Query Frame = 3
Query:   60 FVRFQDERPKVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYF-----SFPKQSRDY--SRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            F+   +E+P +   E +  +P I L+  D       E  + I EAC   G F VV+HGV   LI+D  RL   FF +P   K K     G+  G+  S   +      W+E +++      S  +  +DY       + E + +V ++Y + +  ++ K++E+L  ++G+ ++       + D  + +N+YP C  PDLTLG   H DP ++T+L QD V GLQ   DN   W +++P   AFVVN+GD
Sbjct:   46 FIWPDEEKPSIDIPELN--VPFIDLSSQDST----LEAPRVIAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVDN--QWQSIRPNPKAFVVNIGD 286          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.854e-26
Identity = 79/227 (34.80%), Postives = 123/227 (54.19%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            P+I+L  ++  G +RA   +KI +ACE+WG F+ V+HG+  +L+  + ++  E +    EE+ K  +   K  G      L+ EV   DW    T++       + S  PD  + +  + K+++ K+  ++ +LL++L E +GLEK  L K      +      V+ YP CP PDL  GL+ HTD G I LL Q D+V GLQ  KD    W+ V P++ + VVNLGD
Sbjct:    5 PIINLEKLN--GEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFKESI---KNRGL---DSLRSEVNDVDWES--TFYLKHLPVSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--EWVDVPPVKHSIVVNLGD 219          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.034e-26
Identity = 78/227 (34.36%), Postives = 128/227 (56.39%), Query Frame = 3
Query:  120 PVISLAGIDDVGG-KRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            P+I +  +++  G +R+ +  +I +AC +WG FQVV+H +  +L+  + R+  E +    E+K K DM   K    +VS+  Q   + DW    T++   + + + S  PD  + + ++ KE++ ++  ++ +LL++L E +GLEK  L  A    +       V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  KD    W+ V P++ + VVNLGD
Sbjct:    8 PIIDMEKLNNYNGVERSLVLDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHYKKFREQKFK-DMVQTKG---LVSAESQVNDI-DWES--TFYLRHRPTSNISEVPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--HWVDVPPMKHSIVVNLGD 225          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.575e-26
Identity = 74/225 (32.89%), Postives = 111/225 (49.33%), Query Frame = 3
Query:  117 IPVISLAGIDDVGG-KRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPE-EKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            IP I L G D     K     + I EA   WG FQV++HGV  +L+  M     +F   PPE  K  +    G+K  ++ +  L      +WR+    +  P    D     D PE   +V  EYS ++M +   L E+LSEA+GL    L         +++ +Y+P CP+PDLT G  +H+D   +T+LL D + GLQ  ++    W  V  + GA ++N+GD
Sbjct:   64 IPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRDTFYCYMAP----DPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDNIEGLQVCREG--YWFDVPHVPGALIINIGD 282          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.587e-26
Identity = 81/230 (35.22%), Postives = 125/230 (54.35%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK----DWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQK---IVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            P+I+L  ++  G +R    +KI +ACE+WG F++V+HG+  +++  + +L    +    E++ K  ++  KKG       L+G  V+    DW    T+F     S + S+ PD  + + EV +++  +L  +A +LL++L E +GLEK  L               V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  KD    WI V P+  + VVNLGD
Sbjct:    5 PIINLEKLN--GAERVATMEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVA--KKG-------LEGVEVEVTDMDWES--TFFLRHLPSSNISQLPDLDDVYREVMRDFRKRLEKLAEELLDLLCENLGLEKSYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--RWIDVPPMRHSIVVNLGD 219          
The following BLAST results are available for this feature:
BLAST of CX046817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GAO1D_WHEAT7.766e-2731.01Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAOX3_ARATH1.014e-2631.76Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAO1B_WHEAT1.014e-2631.66Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
ACCO4_SOLLC2.260e-2635.681-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
NCS1_COPJA2.951e-2634.12S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAOX2_ARATH2.951e-2631.33Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
ACCO1_ARATH3.854e-2634.801-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO_DIACA5.034e-2634.36Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCH2_ARATH6.575e-2632.891-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO2_SOLLC8.587e-2635.221-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10D06-H11-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046817 ID=CX046817; Name=CX046817; organism=Citrus sinensis; type=EST; length=786bp
AATTCATGGCTCCTTCAACCCTCACCGCCCTTGCTGGGGAGAAAACCCTC
AACCCAAGCTTTGTCCGCTTTCAAGATGAGCGTCCCAAGGTGGCTTATAA
TGAATTCAGCAATGAAATTCCTGTGATTTCACTTGCTGGGATTGATGACG
TCGGTGGCAAAAGGGCTGAGATTTGCAAGAAAATTGTTGAGGCGTGTGAG
GACTGGGGAATCTTTCAAGTTGTTGATCATGGTGTTGATGCTAAGCTTAT
ATCCGATATGACTCGTCTTGCTACAGAATTTTTCGCCCTGCCCCCTGAGG
AGAAGCTCAAGTTTGATATGTCCGGTGGGAAGAAGGGTGGCTTCATTGTC
TCTAGCCACCTTCAGGGTGAAGTAGTAAAAGATTGGCGTGAAATAGTGAC
GTATTTCTCATTCCCAAAGCAAAGCCGAGATTACTCACGTTGGCCGGACA
AGCCAGAAGGCTGGATGGAAGTAACAAAAGAATACAGTGACAAATTAATG
GGAGTGGCGTGCAAGCTTCTGGAAGTTTTATCAGAGGCAATGGGATTGGA
GAAGGAAGCTTTGACCAAAGCATGTGTGGACATGGACCAAAAGATTGTTG
TCAATTACTATCCAAAATGCCCACAACCCGACCTCACTCTCGGACTCAAA
CGCCACACGGATCCGGGAACCATCACACTCTTGCTCCAAGATCAAGTTGG
TGGCCTCCAGGCTACCAAGGATAATGGTAAGACGTGGATCACCGTTCAAC
CTATTGAAGGTGCTTTTGTGGTCAATCTGGGTGATC
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