CX046817

Overview
NameCX046817
Unique NameCX046817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 76/212 (35.85%), Postives = 113/212 (53.30%), Query Frame = 3
Query:  162 RAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQK---IVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            R    + I +ACE+WG F+ V+HG+  +++  + +L  E +    E++ K  ++   KG   V S +      DW    T+F         S  PD  + + +V KE++ KL  +A +LL++L E +GLEK  L KA            V+ YP CP+P+L  GL+ HTD G I LL Q D+V GLQ  KD+   WI V P+  + V+NLGD
Sbjct:   17 RKSTMELIKDACENWGFFECVNHGISIEMMDTVEKLTKEHYKKCMEQRFKEMVA--TKGLECVQSEIDD---LDWES--TFFLRHLPVSSISEIPDLDDDYRKVMKEFALKLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDD--QWIDVPPMRHSIVINLGD 219          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 78/227 (34.36%), Postives = 122/227 (53.74%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQK---IVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            P+I+L  +   G +R    + I +ACE+WG F++V+HG+  +++  + +     +    E++ K  ++   KG       +Q EV   DW    T+F       + S  PD  + + EV ++++ +L  +A +LL++L E +GLEK  L KA            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  KD+   WI V P+  + V+NLGD
Sbjct:    5 PIINLENL--CGAERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKFTKGHYKKCMEQRFKELVAS--KG----LEAVQAEVTDLDWES--TFFLRHLPVSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDD--QWIDVPPMRHSIVINLGD 219          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.608e-24
Identity = 77/236 (32.63%), Postives = 122/236 (51.69%), Query Frame = 3
Query:  114 EIPVISLAGIDD---VGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSFPKQSR----DY---SRWPD-KPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            ++PV+ +  + D    G +RA    ++  AC   G FQV +HGVDA L       A++FF LP  EK +     G   G+  S+H      K  W+E +++    + +     DY   +  PD  P G   V ++Y +++  ++  ++E+L  ++G+E+    +   D    +  NYYP CP+P+ TLG   H DP  +T+LLQD VGGL+   D    W  V P+ GA V+N+GD
Sbjct:   62 DMPVVDVGVLRDGDAEGLRRA--AAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGY-TSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMG--RVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDG--EWRPVSPVPGAMVINIGD 290          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.608e-24
Identity = 77/236 (32.63%), Postives = 122/236 (51.69%), Query Frame = 3
Query:  114 EIPVISLAGIDD---VGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSFPKQSR----DY---SRWPD-KPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            ++PV+ +  + D    G +RA    ++  AC   G FQV +HGVDA L       A++FF LP  EK +     G   G+  S+H      K  W+E +++    + +     DY   +  PD  P G   V ++Y +++  ++  ++E+L  ++G+E+    +   D    +  NYYP CP+P+ TLG   H DP  +T+LLQD VGGL+   D    W  V P+ GA V+N+GD
Sbjct:   62 DMPVVDVGVLRDGDAEGLRRA--AAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGY-TSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMG--RVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDG--EWRPVSPVPGAMVINIGD 290          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.712e-24
Identity = 78/227 (34.36%), Postives = 123/227 (54.19%), Query Frame = 3
Query:  120 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            P+I+L  ++  G +RA+  + I +ACE+WG F++V+HG+  +++  + ++    +    E++ K  ++   KG       +Q EV   DW    T+F       +    PD  + + EV ++++ +L  +A +LL++L E +GLEK  L K             V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  KD    WI V P+  + VVNLGD
Sbjct:    5 PIINLEKLN--GSERADTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVAS--KG----LEAVQAEVTDLDWES--TFFLRHLPVSNICEVPDLDDQYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDG--QWIDVPPMRLSIVVNLGD 219          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.712e-24
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 3
Query:  114 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK-DWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV---VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            + PV+ L+ +  +G +R +    I +ACE+WG F++V+HG+   L+ +  ++  E + +  E+K   DM   K        +L+ EV   DW E   Y     QS  Y   PD  + +    K++  +L  +A  LL++L E +GLEK  L K             V+ YP CP+P++  GL+ HTD G I LL Q D+V GLQ  KD    WI V P+  + V+NLGD
Sbjct:    6 KFPVVDLSKL--IGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFN-DMLKSKG-----LENLEREVEDVDW-ESTFYLRHLPQSNLYD-IPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDG--DWIDVPPLNHSIVINLGD 222          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.037e-24
Identity = 70/239 (29.29%), Postives = 116/239 (48.54%), Query Frame = 3
Query:   90 VAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKE------ALTKACVDMDQKIV-VNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            V+++     IPVI L+  D        +   I +A + WG FQ+ +HG+  KL+ D+  L+   F +P E KL+   S     G+           K W E  T      ++   + WP     +  + +EY D++  +A +LL  +  ++G+  E       L K+   + +  + +N+YP CP+P+  +GL  HTD   +T+L Q   GGLQ  ++    W+TV+P  G  VVN+GD
Sbjct:   40 VSFDAVEESIPVIDLSNPD--------VTTLIGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSNTGGLQVFREE-SGWVTVEPAPGVLVVNIGD 269          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 73/236 (30.93%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 SNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEAL-------TKACVDMDQKIV-VNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGL--QATKDNGKTWITVQPIEGAFVVNLGD 785
            S  IPVISL+  ++ G  R        +ACE+WG+F + DHGV   L+ ++       F+LP   K+    S  +  G+ V           W E  +      +      WPD    +  V +EY   +  ++ +L+ +L  ++GL  E L       T +  D  Q  + +N YP CP P L +GL  HTD   +T+L Q  + GL  ++ ++ G  WI V+PIEG+ VV +GD
Sbjct:   44 SGPIPVISLSNPEEHGLLR--------QACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGD 271          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.804e-23
Identity = 70/224 (31.25%), Postives = 108/224 (48.21%), Query Frame = 3
Query:  117 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPE-EKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            IP I L G+ +    R  +  K+ +A E +G FQ ++HGV   ++  M      F    PE  K+ +     KK  +  ++ L       WR+ ++    P    D  +  D PE   E+  EYS ++M +A  + E+LSEA+GL    L +        ++ + +P CP+P+ T G  +HTD   +T+LL D  GGLQ   D    WI V P   A + N+GD
Sbjct:   55 IPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLSCVMAP----DVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDG--YWIDVPPNPEALIFNVGD 272          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.516e-22
Identity = 73/212 (34.43%), Postives = 102/212 (48.11%), Query Frame = 3
Query:  192 ACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGF---IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWME---VTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV--------VNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            A +DWG F +V HGV   L+  +       FALP  EK++     G   G+    +SS     +   W E  T+     +S     WP     +     V +E+  ++  +A KLLE+   A+GL  E +  A V+ +QKI         +N+YPKCP P   LGL  HTD G  T +LQ  V GLQ  +     W+TV  + GA VVN+GD
Sbjct:   66 AAQDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCM---WSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQV--AAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGD 272          
The following BLAST results are available for this feature:
BLAST of CX046817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ACCO_PEA1.619e-2435.851-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO4_PETHY1.619e-2434.361-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
GAOX2_ORYSJ3.608e-2432.63Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI3.608e-2432.63Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCO_TOBAC4.712e-2434.361-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO1_BRAJU4.712e-2434.501-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
G3OX4_ARATH8.037e-2429.29Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3OX3_ARATH1.050e-2330.93Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
GSL_ARATH6.804e-2331.25Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G3O23_WHEAT1.516e-2234.43Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10D06-H11-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046817 ID=CX046817; Name=CX046817; organism=Citrus sinensis; type=EST; length=786bp
AATTCATGGCTCCTTCAACCCTCACCGCCCTTGCTGGGGAGAAAACCCTC
AACCCAAGCTTTGTCCGCTTTCAAGATGAGCGTCCCAAGGTGGCTTATAA
TGAATTCAGCAATGAAATTCCTGTGATTTCACTTGCTGGGATTGATGACG
TCGGTGGCAAAAGGGCTGAGATTTGCAAGAAAATTGTTGAGGCGTGTGAG
GACTGGGGAATCTTTCAAGTTGTTGATCATGGTGTTGATGCTAAGCTTAT
ATCCGATATGACTCGTCTTGCTACAGAATTTTTCGCCCTGCCCCCTGAGG
AGAAGCTCAAGTTTGATATGTCCGGTGGGAAGAAGGGTGGCTTCATTGTC
TCTAGCCACCTTCAGGGTGAAGTAGTAAAAGATTGGCGTGAAATAGTGAC
GTATTTCTCATTCCCAAAGCAAAGCCGAGATTACTCACGTTGGCCGGACA
AGCCAGAAGGCTGGATGGAAGTAACAAAAGAATACAGTGACAAATTAATG
GGAGTGGCGTGCAAGCTTCTGGAAGTTTTATCAGAGGCAATGGGATTGGA
GAAGGAAGCTTTGACCAAAGCATGTGTGGACATGGACCAAAAGATTGTTG
TCAATTACTATCCAAAATGCCCACAACCCGACCTCACTCTCGGACTCAAA
CGCCACACGGATCCGGGAACCATCACACTCTTGCTCCAAGATCAAGTTGG
TGGCCTCCAGGCTACCAAGGATAATGGTAAGACGTGGATCACCGTTCAAC
CTATTGAAGGTGCTTTTGTGGTCAATCTGGGTGATC
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