CX046817

Overview
NameCX046817
Unique NameCX046817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22
Identity = 77/272 (28.31%), Postives = 129/272 (47.43%), Query Frame = 3
Query:   30 LAGEKTLNPSFVRFQDERP-KVAYNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTY----------------FSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGL---EKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            L+G+  +   F+   +E P  VA  E   E+ +I +      G +R+ + +++ EACE  G F VV+HG++A L+ +  R    FF LP  EK +     G+  G+  S   +      W+E +++                +   K   ++ R         EV   Y  ++  ++ +L+EVL E++G+    +    +     D  + +NYYP C +P  TLG   H DP ++T+L QD VGGL+   +    W  ++P  GA VVN+GD
Sbjct:   18 LSGQTEIPSQFIWPAEESPGSVAVEEL--EVALIDVGA----GAERSSVVRQVGEACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLG------EVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEG--RWRAIRPRPGALVVNVGD 275          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22
Identity = 72/212 (33.96%), Postives = 103/212 (48.58%), Query Frame = 3
Query:  192 ACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGF---IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWME---VTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV--------VNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            A +DWG F +  HGV  +L++ +       FALP  EK++     G   G+    +SS     +   W E  T+     +S     WP     +     V +E+  ++  +A KLLE+   A+GL  E +  A V+ +QKI         +N+YPKCP P   LGL  HTD G  T +LQ  V GLQ  +     W+TV  + GA VVN+GD
Sbjct:   66 AAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCM---WSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQV--AAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGD 272          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22
Identity = 71/231 (30.74%), Postives = 113/231 (48.92%), Query Frame = 3
Query:  114 EIPVISLAGIDDVGGKRAEICKK-IVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDM--SGGKKGGFIVSSHLQGEVVKDWREIVTYFSFP----KQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            E+PVI ++ + D   +  E CK+ I  A  +WG FQV++HG+   ++  M +     F  P ++K K +   +G  + G   ++ ++      W E    F  P      ++D++      E       +++ +   +A  L EVL+E  G       + CV     + +N YP CP+P    GL  HTD   +T+L QDQVGGLQ  KDN   WI V+P   A ++N+GD
Sbjct:   41 ELPVIDVSRLIDGAEEEREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSEKFSAGSYRWGTPSATSIRQ---LSWSEA---FHVPMTDISDNKDFTTLSSTME-------KFASESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDN--RWIAVKPNPKALIINIGD 256          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22
Identity = 75/232 (32.33%), Postives = 122/232 (52.59%), Query Frame = 3
Query:  108 SNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKA-CVDMDQKIV----VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            S   PVI++  +   G +R      + +ACE+WG++++++HG+  +L++ +  +  E +    E++ K   S           +++ E + DW    T+F     + + S+ PD  +      KE++ +L  +A +LL++L E +GLEK  L K  C   D        V+ YP CP+P+L  GL+ HTD G I LL Q D+V GLQ  KD    WI V P+  + VVN+GD
Sbjct:    3 SGSFPVINMELLQ--GSQRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFASKTLD----TVENVEPENL-DWES--TFFLRHLPTSNISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--EWIDVPPVRHSIVVNIGD 223          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.825e-22
Identity = 71/212 (33.49%), Postives = 102/212 (48.11%), Query Frame = 3
Query:  192 ACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGF---IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWME---VTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIV--------VNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            A +DWG F +  HGV  +L++ +       FALP  EK++     G   G+    +SS     +   W E  T+     +S     WP     +     V +E+  ++  +A KLLE+   A+GL  E +  A V+ + KI         +N+YPKCP P   LGL  HTD G  T +LQ  V GLQ  +     W+TV  + GA VVN+GD
Sbjct:   66 AAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCM---WSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQV--AAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGD 272          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.825e-22
Identity = 76/232 (32.76%), Postives = 119/232 (51.29%), Query Frame = 3
Query:  108 SNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKA-CVDMDQKIV----VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            S   PVI++  +   G +R      + +ACE+WG F++++HG+  +L++ +  +  E +    E++ K   S       + S         DW    T+F     + + S+ PD  +      KE++ +L  +A +LL++L E +GLEK  L +  C   D        V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  KD  + WI V P+  + VVN+GD
Sbjct:    3 SGSFPVINMELLQ--GSQRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEFASKT-----LDSVENVDPDNLDWES--TFFLRHLPTSNISQIPDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD--REWIEVPPLRYSIVVNIGD 223          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 68/242 (28.10%), Postives = 124/242 (51.24%), Query Frame = 3
Query:   96 YNEFSNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMS-----GGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLE-KEALTKACVDMDQKIV--VNYYPKCPQPDLT----LGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            Y    N +P+   + I  V   + +    IV+ACED+G F+V++HG+    IS +   A +FF+LP  EK K   +     G K+ G      L G++   W E +   +   Q  ++S + +  + +  + K+Y   +  +AC++L++++E + ++ K   +K  +D     +  VN+YP CP+  +     +G   HTDP  I++L  +   G Q +  +G +WI+V P   +F +N+GD
Sbjct:   12 YTYVRNNMPITFSSSIPLVDLSKPDAKTLIVKACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEKAGPANPFGYGNKRIG------LNGDI--GWIEYLLLTT--NQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDG-SWISVPPDHSSFFINVGD 242          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 74/221 (33.48%), Postives = 111/221 (50.23%), Query Frame = 3
Query:  153 GGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVK----DWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKA-CVDMDQKIV----VNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQ-VGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            G +R++    + +ACE+WG F++++HG+  +       +  E +    E   +F     K+  F   +   GE V     DW    T+F     + + S+ PD  E      KE++  L  +A +LL++L E +GLEK  L +  C   D        V+ YP CP+P+L  GL+ HTD G I LL QD  V GLQ  KD  + WI V P+  + VVN+GD
Sbjct:    6 GSRRSDAMAVLRDACENWGFFELLNHGISHEPNEQSETVNKEHYR---EHYRRFREQRFKE--FAAKTLDSGENVDGDNLDWES--TFFLRHLPTSNISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKD--EEWIDVPPMRHSIVVNIGD 217          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 71/239 (29.71%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  108 SNEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMS-----GGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQS--RDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLE-KEALTKACVD--MDQKIVVNYYPKCPQPD---LTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            S+ IPV++LA          E   +IV+ACE++G F+VV+HGV  +L++ + + A  FF LP   K +         G K+ G        G+V   W E +   + P+ S  +  + +   P+ + E  +EY  ++  V+ K+LE+++E +G+E ++ L+K   D   D  + +N+YP   +     + +G   HTDP  I++L  +   GLQ    +G +W+ V P   +F +N+GD
Sbjct:   28 SHSIPVVNLAD--------PEAKTRIVKACEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLPQSLKNRAGPPEPYGYGNKRIG------PNGDV--GWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDG-SWVAVPPDHSSFFINVGD 249          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.286e-17
Identity = 69/239 (28.87%), Postives = 116/239 (48.54%), Query Frame = 3
Query:  117 IPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWP------DKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLE-KEALTKACVDM--DQKIVVNYYPKCPQPDL-------TLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            IPVI ++   D   K A     +V+ACED+G F+V++HGV A+L+S +     +FF+LP  EK +  ++G   G         G+V   W E    +     + D    P        P  +    +EY+  +  +   +LE +++ +G++ +  L+K   D   D  + +N+YP CP  +         +G   HTDP  I++L  +   GLQ   ++G +WI+V P   +F  N+GD
Sbjct:   18 IPVIDMS---DPESKHA-----LVKACEDFGFFKVINHGVSAELVSVLEHETVDFFSLPKSEKTQ--VAGYPFGYGNSKIGRNGDV--GWVE----YLLMNANHDSGSGPLFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDG-SWISVPPDHTSFFFNVGD 239          
The following BLAST results are available for this feature:
BLAST of CX046817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GAOX1_ORYSJ1.980e-2228.31Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G3O22_WHEAT1.980e-2233.96Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G2OX8_ARATH5.760e-2230.74Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
ACCO1_DORSP5.760e-2232.331-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
G3O21_WHEAT9.825e-2233.49Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCO2_DORSP9.825e-2232.761-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
G2OX1_PEA1.283e-2128.10Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
ACCO_DENCR7.041e-2033.481-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
G2OX2_ARATH6.590e-1829.71Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX1_ARATH7.286e-1728.87Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10D06-H11-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046817 ID=CX046817; Name=CX046817; organism=Citrus sinensis; type=EST; length=786bp
AATTCATGGCTCCTTCAACCCTCACCGCCCTTGCTGGGGAGAAAACCCTC
AACCCAAGCTTTGTCCGCTTTCAAGATGAGCGTCCCAAGGTGGCTTATAA
TGAATTCAGCAATGAAATTCCTGTGATTTCACTTGCTGGGATTGATGACG
TCGGTGGCAAAAGGGCTGAGATTTGCAAGAAAATTGTTGAGGCGTGTGAG
GACTGGGGAATCTTTCAAGTTGTTGATCATGGTGTTGATGCTAAGCTTAT
ATCCGATATGACTCGTCTTGCTACAGAATTTTTCGCCCTGCCCCCTGAGG
AGAAGCTCAAGTTTGATATGTCCGGTGGGAAGAAGGGTGGCTTCATTGTC
TCTAGCCACCTTCAGGGTGAAGTAGTAAAAGATTGGCGTGAAATAGTGAC
GTATTTCTCATTCCCAAAGCAAAGCCGAGATTACTCACGTTGGCCGGACA
AGCCAGAAGGCTGGATGGAAGTAACAAAAGAATACAGTGACAAATTAATG
GGAGTGGCGTGCAAGCTTCTGGAAGTTTTATCAGAGGCAATGGGATTGGA
GAAGGAAGCTTTGACCAAAGCATGTGTGGACATGGACCAAAAGATTGTTG
TCAATTACTATCCAAAATGCCCACAACCCGACCTCACTCTCGGACTCAAA
CGCCACACGGATCCGGGAACCATCACACTCTTGCTCCAAGATCAAGTTGG
TGGCCTCCAGGCTACCAAGGATAATGGTAAGACGTGGATCACCGTTCAAC
CTATTGAAGGTGCTTTTGTGGTCAATCTGGGTGATC
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