CX046817

Overview
NameCX046817
Unique NameCX046817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 57/210 (27.14%), Postives = 101/210 (48.10%), Query Frame = 3
Query:  183 IVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPK--QSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGL-EKEALTKACVD--MDQKIVVNYYPKCPQPDL----TLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            IV AC D+G F++V+HGV  +L++++   A  FF     EK   D +G        S  +       W E +   + P     +    + + P  +  V + Y   +  +   +LE+++E +G+ ++  L++   D   D    +N+YP CP+        +G   HTDP  I++L  +   GLQ    +G TW++V P + +F +N+GD
Sbjct:   41 IVNACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEK---DRAGPPDPFGYGSKRIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDG-TWVSVPPDQTSFFINVGD 246          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.847e-14
Identity = 61/232 (26.29%), Postives = 110/232 (47.41%), Query Frame = 3
Query:  147 DVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRW--PDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGL-EKEALTKACVD--MDQKIVVNYYPKCPQ--------------PDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            D+  +R+++ + +V+ACE++G F+VV+H V  ++IS +     EFF+    EK +   S     G     ++     K   E +   S P    + S+    D P  +  +  +Y   +  + C++LE+ +E + + +K +L+K   D   D  + +N+YP   +               +  +G   H+DP  +T+L  + VGGLQ +  +G  WI V P    F V +GD
Sbjct:   24 DLSLERSQLSELVVKACEEYGFFKVVNHSVPKEVISRLDEEGIEFFSKNSSEKRQAGTSTPFGYG---CKNIGPNGDKGELEYLLLHSNPISISERSKTIAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHG-LWIPVPPDPSEFYVMVGD 251          
BLAST of CX046817 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 61/232 (26.29%), Postives = 105/232 (45.26%), Query Frame = 3
Query:  114 EIPVISLAGI---DDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGF-----IVSSHLQGEVVKDWREIVTYFSFPKQSRDYSRWPDKPEGWMEVTKEYSDKLMGVACKLLEVLSEAMGLEKEALTKACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDNGKTWITVQPIEGAFVVNLGD 785
            ++PVI L+ +   ++V  KR    K++V A ++WG FQ+V+HG+   +   M     + F  P   K++   S   K  +       +S  Q  V + +  I++         + SR  D       + + Y  ++  VA  + E+L + + +  E         +  + +N Y          GL  HTD   +T+L QDQ+GGL+   +N   WI+V+P   A  VN+GD
Sbjct:   39 KLPVIDLSHLTSGEEV--KRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPSATSPAQYSVSEAFHIILS---------EVSRISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLEL--ENNGQWISVKPCLEALTVNIGD 257          
The following BLAST results are available for this feature:
BLAST of CX046817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
G2OX_PHACN1.795e-1527.14Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX2_PEA9.847e-1426.29Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G2OX7_ARATH1.680e-1326.29Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10D06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10D06-H11-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046817 ID=CX046817; Name=CX046817; organism=Citrus sinensis; type=EST; length=786bp
AATTCATGGCTCCTTCAACCCTCACCGCCCTTGCTGGGGAGAAAACCCTC
AACCCAAGCTTTGTCCGCTTTCAAGATGAGCGTCCCAAGGTGGCTTATAA
TGAATTCAGCAATGAAATTCCTGTGATTTCACTTGCTGGGATTGATGACG
TCGGTGGCAAAAGGGCTGAGATTTGCAAGAAAATTGTTGAGGCGTGTGAG
GACTGGGGAATCTTTCAAGTTGTTGATCATGGTGTTGATGCTAAGCTTAT
ATCCGATATGACTCGTCTTGCTACAGAATTTTTCGCCCTGCCCCCTGAGG
AGAAGCTCAAGTTTGATATGTCCGGTGGGAAGAAGGGTGGCTTCATTGTC
TCTAGCCACCTTCAGGGTGAAGTAGTAAAAGATTGGCGTGAAATAGTGAC
GTATTTCTCATTCCCAAAGCAAAGCCGAGATTACTCACGTTGGCCGGACA
AGCCAGAAGGCTGGATGGAAGTAACAAAAGAATACAGTGACAAATTAATG
GGAGTGGCGTGCAAGCTTCTGGAAGTTTTATCAGAGGCAATGGGATTGGA
GAAGGAAGCTTTGACCAAAGCATGTGTGGACATGGACCAAAAGATTGTTG
TCAATTACTATCCAAAATGCCCACAACCCGACCTCACTCTCGGACTCAAA
CGCCACACGGATCCGGGAACCATCACACTCTTGCTCCAAGATCAAGTTGG
TGGCCTCCAGGCTACCAAGGATAATGGTAAGACGTGGATCACCGTTCAAC
CTATTGAAGGTGCTTTTGTGGTCAATCTGGGTGATC
back to top