DN618428

Overview
NameDN618428
Unique NameDN618428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618428 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 42/143 (29.37%), Postives = 64/143 (44.76%), Query Frame = -2
Query:  179 ETKFCATSLESMLDFTRGVFGLETNFKILTTNFITNPLIGNPLQNYTILKLP--EEIYAPKMVACHSMPYPYAVFYCHYQESENKLFQVSLTGENGVRVE-AAAVCHMDTSQWNRDHASFRVLKIKPGTSPVCHFLPVDNLVW 598
            ETK C  S E M+DF   V G     +       T   +    +   I K+         K V+CH   YPY ++YCH            L  ++  ++    A+CHMDTS W  +H +F +L  +PG   VCH++  +++ W
Sbjct:  483 ETKRCVGSAEDMIDFATSVLGRSVVLR-------TTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPKSKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNW 618          
BLAST of DN618428 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = -2
Query:  179 ETKFCATSLESMLDFTRGVFGLETNFKILTTNFITNPLIGNPLQNYTILKLPEEIYAPKMVACHSMPYPYAVFYCHYQESENKLFQVSLTGENGVRV--EAAAVCHMDTSQWNRDHASFRVLKIKPGTSPVCHFLPVDNLVW 598
            ETK C  S E M+DF   V G      ++ T   TN   GN +     +K        K V+CH   YP  ++YCH    + ++++  +   N         A+CH+DTS W   H +F  L   PG   VCH++  +++ W
Sbjct:  493 ETKQCVNSAEDMIDFATSVLGRNV---VVRTTENTNGSKGNIMIGS--IKGINGGKVTKSVSCHQTLYPSLLYYCH-SVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTW 628          
BLAST of DN618428 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = -2
Query:  179 ETKFCATSLESMLDFTRGVFGLETNFKILTTNFITNPLIGNPLQNYTILKLPEEIYAPKMVACHSMPYPYAVFYCHYQESENKLFQVSLTGENGVRV--EAAAVCHMDTSQWNRDHASFRVLKIKPGTSPVCHFLPVDNLVW 598
            ETK C  S E M+DF   V G      ++ T   TN   GN +     +K        K V+CH   YP  ++YCH    + ++++  +   N         A+CH+DTS W   H +F  L   PG   VCH++  +++ W
Sbjct:  490 ETKQCVNSAEDMIDFATSVLGRNV---VVRTTENTNGSKGNIMIGS--IKGINGGKVTKSVSCHQTLYPSLLYYCH-SVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTW 625          
BLAST of DN618428 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 39/141 (27.66%), Postives = 68/141 (48.23%), Query Frame = -2
Query:  179 ETKFCATSLESMLDFTRGVFGLETNFKILTTNFITNPLIGNPLQNYTILKLPEEIYAPKMVACHSMPYPYAVFYCHYQESENKLFQVSLTGENGVRVE-AAAVCHMDTSQWNRDHASFRVLKIKPGTSPVCHFLPVDNLVW 598
            ETK CATS E ++DF   + G +    I+  +  +    G  ++   +  + +     + V+CH   +PY V+YCH            +  ++  ++    A+CH+DTS W+  H +F  L  KPG   VCH++   ++ W
Sbjct:  488 ETKRCATSAEDIVDFAVEMLGND----IVVRSTASTAGSGGQIRLGNVTGV-DGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTW 623          
BLAST of DN618428 vs. ExPASy Swiss-Prot
Match: BURP4_ORYSJ (BURP domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=BURP4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = -2
Query:  176 CATSLESMLDFTRGVFGLETNFKILTTNFITNPLIGNPLQNYTILKLP-EEIYAPKMVACHSMPYPYAVFYCHYQESENKLFQVSLTGENGVRV---EAAAVCHMDTSQWNRDHASFRVLKIKPGTSPVCHFLPVDNLVWV 586
            CATS E++LDF     G            +T  + G   + Y +       I    +VACH MPY Y V+YCH + ++    +V L     V +    A AVCH++T+ W  D A F +LK   G + +CH++P   ++W+
Sbjct:  347 CATSREAVLDFAASALGTSA------PRAVTTLVHGREPRRYVVAADGVARIGGDAVVACHPMPYLYEVYYCH-RPADAVALRVDLHAVADVGLGGATAVAVCHVNTTTW--DSAYFELLKASRGDA-ICHYMPQGYVLWL 477          
The following BLAST results are available for this feature:
BLAST of DN618428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
JP630_ARATH4.325e-1229.37Probable polygalacturonase non-catalytic subunit J... [more]
GP3_SOLLC1.258e-1130.28Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC1.258e-1130.28Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
BURPC_ORYSJ3.662e-1127.66BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURP4_ORYSJ4.782e-1131.91BURP domain-containing protein 4 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618428 ID=DN618428; Name=DN618428; organism=Citrus sinensis; type=EST; length=599bp
TTCACTTGCAACATACACATTTTACATATTTGAGCTAGCACTCATATATA
CAAGACAATTAATTGAACCTGCTCTGAATACAAGATTCTGTAGCATCACG
ACACATATGGCTACACACATACATATAAATAATAATCATAGGTTAAACAA
TTAATTAAGCGGGCAATTGATCAGGCACCCAAACTAAATTATCAACAGGC
AAAAAATGGCACACAGGGGAAGTTCCAGGCTTAATTTTGAGCACACGAAA
TGAAGCATGATCACGATTCCACTGAGAGGTGTCCATGTGACAAACAGCAG
CAGCTTCAACTCTTACTCCATTTTCACCGGTCAGAGAAACTTGAAACAAC
TTGTTCTCACTCTCTTGATAATGGCAATAAAAGACTGCATATGGGTAAGG
CATAGAATGACATGCTACCATTTTTGGAGCATAAATTTCTTCAGGCAATT
TCAAGATGGTATAGTTTTGCAAAGGATTACCAATTAACGGGTTTGTGATG
AAATTAGTGGTTAAAATTTTGAAGTTGGTTTCCAATCCGAAGACGCCGCG
TGTGAAATCAAGCATGGATTCTAAGGAGGTAGCACAAAACTTGGTCTCT
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