DN618424

Overview
NameDN618424
Unique NameDN618424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 62/188 (32.98%), Postives = 92/188 (48.94%), Query Frame = 3
Query:  105 RDVCIVGVARTPMGGFLG------TLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            +DV IV   RTPMG   G          LSA  + SI     L+  N+DP+ ++++++G V      G   AR AAL AGI   V   TVN++C S ++A+  AS++IQ+G  D+ + GG+E M + P               +   GM             MG  AE+  + H I+R+ QD+FA +S
Sbjct:    2 KDVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSIL----LRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM-------------MGLTAEMLGKLHGISRQQQDEFAARS 172          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 3
Query:   93 SIKPRDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            S+ PRDV ++   R+PMG    G   ++ A  L +  I+A   R + VDP+ V+++ +G V  +   G   ARQ +L   I ++    TVN++C S + AI  A+Q+I  G  DV V GG+E M + P         +   + +    M             MG  AE+ A+ H I+R+ QD+F  +S
Sbjct:    2 SLNPRDVVVIDCVRSPMGRAKAGCFRNVRAETLSATLIDALFDRNDKVDPAEVEDLIWGCVNQTLEQGFNVARQISLLTRIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFVVGGVEHMGHVPMTQGFDHNPAASKYSAKASNM-------------MGLTAEMLAKMHGISRQQQDEFGARS 176          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 60/184 (32.61%), Postives = 94/184 (51.09%), Query Frame = 3
Query:  105 RDVCIVGVARTPMGGFLG-TLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            +DV IV   RTPMG   G    ++ A  L +  +++ L R  N+DP+ ++++++G V      G   AR AAL AGI   V   TVN++C S ++A+  AS++IQ+G  D+ + GG+E M + P               +   GM             MG  AE+  + H I+R+ QD+FA +S
Sbjct:    2 KDVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM-------------MGLTAEMLGKLHGISRQQQDEFAARS 172          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 65/191 (34.03%), Postives = 95/191 (49.74%), Query Frame = 3
Query:   93 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R   VDP+ V++V +G V  +   G   AR A+L   I ++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L+       MG  AE+  + H ITRE QD F V+S
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNTKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRS 176          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 62/185 (33.51%), Postives = 92/185 (49.73%), Query Frame = 3
Query:  105 RDVCIVGVARTPMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLK-DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            +   IV   RTPMG    G   ++ A  L +  ++A L R   +DP+ +++V +G V      G   AR AAL AGI       TVN++C S ++AI  A+++I  G+ D  + GG+E M + P        G    H  L   + K  G+        MG  AE+  + H ITR+ QD+FAV+S
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNMRAESLSAELMKALLVRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNAALLAGIPKQAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIVGGVEHMGHVP-----MNHGVDF-HPGLATNVAKASGM--------MGLTAEMLGKMHGITRQQQDEFAVRS 172          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = 3
Query:  105 RDVCIVGVARTPMGGFL-GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            ++V IV   RTPMG    G      A  L +  ++  L+R  NVDP+ ++++++G V      G   AR A+L AG+  S+  TTVN++C S ++A+  AS++I +G  D+ + GG+E M + P             + +   GM             MG  AE+  + H I+RE QD FA  S
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVPMNHGVDFHSGLSKNVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAFAS 172          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 3
Query:   93 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R + VDP  V++V +G V  +   G   AR A+L   I ++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F V+S
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGVRS 176          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 64/191 (33.51%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   93 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R   VDP  V++V +G V  +   G   AR A+L   I ++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F ++S
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRS 176          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 64/191 (33.51%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   93 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R   VDP  V++V +G V  +   G   AR A+L   I ++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F ++S
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRS 176          
BLAST of DN618424 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 64/191 (33.51%), Postives = 94/191 (49.21%), Query Frame = 3
Query:   93 SIKPRDVCIVGVARTPMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGILNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVQS 647
            S+ PRDV IV   RTPMG   G +  +  A  + +  I   L+R + +DP  V++V +G V  +   G   AR A+L   I ++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F V+S
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKIDPKEVEDVIWGCVNQTMEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGVRS 176          
The following BLAST results are available for this feature:
BLAST of DN618424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
FADA_AERS44.406e-1632.983-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_HAHCH5.755e-1631.383-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
FADA_AERHH5.755e-1632.613-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_PSEPF7.516e-1634.033-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_SHELP2.187e-1533.513-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_ALISL2.187e-1532.073-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_PSEPU3.730e-1534.033-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEPK4.872e-1533.513-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP14.872e-1533.513-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEE44.872e-1533.513-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618424 ID=DN618424; Name=DN618424; organism=Citrus sinensis; type=EST; length=648bp
CCTCACGTGACCTCTTCACGTGATCCACACTCACTCTGAATCTCGCAGAT
CGTGATTGGCATTGACAAATGGCTCCAGCGGCAGCATCTGATTCGATAAA
GCCTAGAGATGTTTGTATTGTCGGGGTTGCTCGTACACCAATGGGTGGAT
TTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGCTTGGATCTATCGCT
ATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCATCACTTGTACAAGA
AGTTTTCTTTGGCAATGTTCTCAGCGCAAATCTAGGTCAGGCTCCTGCTA
GACAGGCTGCATTGGGTGCAGGAATTCTGAATTCAGTGGTCTGTACTACT
GTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATAATGCTTGCATCACA
GAGTATCCAGTTGGGGATCAATGATGTCATTGTGGCTGGAGGAATGGAAA
GCATGTCTAACGCACCTAAATATTTGGCAGAAGCGAGAAAGGGGTCTCGA
CTTGGACATGATTCTCTGGTTGATGGAATGCTTAAAGATGGATTATGGGA
TGTTTATAATGATTGTAGCATGGGAACTTGTGCTGAACTATGTGCTGAAC
AACATTCAATAACAAGGGAGAATCAGGATGACTTTGCTGTTCAGAGCT
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