CX046787

Overview
NameCX046787
Unique NameCX046787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046787 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  408 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLR 740
            M++E   F  + +YPG G  FVR D+KIFRF  SK    FK ++NPR++ WT  +R+ H K +T++   +  RK  + +R     + + +K  + + K  V +  R  KL+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSL-KPEVRKANREEKLK 110          
BLAST of CX046787 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = -1
Query:  456 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKK 740
            M++E   F  + +YPG G  FVR D+KIFRF  SK    F  ++NPR++ WT  YRR H K ++++S    +R+  +  +  R +   +L+ IK+
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESA---KRRTRKTVKNQRAIVGASLELIKE 92          
BLAST of CX046787 vs. ExPASy Swiss-Prot
Match: RL24_SPOFR (60S ribosomal protein L24 OS=Spodoptera frugiperda GN=RpL24 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.110e-11
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = -1
Query:  408 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAI--KKIDKIRVAREERHHKLR 740
            M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YRR   K   ++ T   +++  R ++Y R +   +L  I  K+  K  V + +R   ++
Sbjct:    1 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQT---KKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIK 110          
BLAST of CX046787 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.110e-11
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  414 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPE-RYDRNLAENTLKAIKKIDKIR--VAREERHHK 740
            M++E   F  + +YPG G  FVR D+KIFRF  SK    F  ++NPR++ WT  YRR H K +T+    E  RKR R   +  R +   +L+ IK+   ++  V + +R  K
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITE----EVARKRTRKSVKAQRAVVGASLELIKERRSLKPEVRKAQRDEK 108          
BLAST of CX046787 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 36/116 (31.03%), Postives = 62/116 (53.45%), Query Frame = -1
Query:  423 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPER----------YDRNLAENTLKAIKKIDKIRVAREER 740
            M++E   F  + +YPG G  FVR D+K+FRF  SK    F  ++NPR++ WT  YRR H K +T++   +  RK  + +R           +R   +  ++  K+ +K +  +E++
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKAQRAVVGASLELIKERRSLKPEIRKAKRDEKAKADKEKK 116          
BLAST of CX046787 vs. ExPASy Swiss-Prot
Match: RL24E_METM7 (50S ribosomal protein L24e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl24e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = -1
Query:  564 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLH 740
            M  + C FC  T+ PG G ++V+ D  +  FC SKC KNFK+ R  RKVKWT  ++R++
Sbjct:    1 MEWKTCSFCEGTIEPGCGKKYVKKDGSVMHFCSSKCEKNFKLGRVGRKVKWTNTFKRIN 59          
The following BLAST results are available for this feature:
BLAST of CX046787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL24A_YEAST5.551e-1234.2360S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24_DEBHA1.237e-1136.8460S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24_SPOFR2.110e-1133.6360S ribosomal protein L24 OS=Spodoptera frugiperda... [more]
RL24_KLULA2.110e-1137.5060S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24_ASHGO3.598e-1131.0360S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]
RL24E_METM78.016e-1145.7650S ribosomal protein L24e OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B10-D19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046787 ID=CX046787; Name=CX046787; organism=Citrus sinensis; type=EST; length=797bp
TTTTTTTTTTTTTTTTTGAAGAAATAAGTTGATTCACATTTTCAAAAACA
ATGAAATTCAGAACTTTTTACAATGAACTGACTACGAAACAACAAATAAA
GTGTTTAATCTAGTGAGCAGAATTGAAATTGATTCAGCGAACAACACACT
TCCAGAGACCCAAATAAAGAGTTGAGGACAAAATTTTTGGTAGATATAAT
ATGATGGAGGAAGCAAGAAGAGTCCCCAATTTAAAATTACTCTTCCATGG
CTTGATTCTCCTCTGCCTGGGCTTGGACCTTGACTTTGATCTTTGGAAGA
GTAAGAGATTGGTCCTGTGCAAGGACAGATGGGGCCTTGACCAGGTGGAT
GCCCTGCTCCAATTCGATCGCAGCCTCTTTCTGCTCCTTGGCTTTCTTTC
CCTTCATTCTCAGTTTATGATGTCTCTCCTCCCTGGCTACTCTGATTTTA
TCAATCTTCTTGATTGCCTTCAGAGTGTTTTCTGCGAGATTTCTGTCATA
TCTCTCTGGCCTATTACGCTTCCTCTCAAACTCAAAGGTAGAGTCCTGAG
TCATATCCTTCCCGTGCAGCCGCCTGTAGGCCTTTGTCCATTTTACTTTA
CGAGGATTTCTTTTCATCTTGAAGTTCTTGTGGCATTTGGATCTACAGAA
GCGAAAAATCTTGGCATCGTTGCGAACAAACTGAATACCATGGCCTGGAT
ATACGGTGGAGGAGCAAAACCAACACTTCTCTAATCTCATCTTATTATCG
AGTTAGCACCAAATTCAAGCTCAGGAATTGGCTCAAAATGTGGTGGA
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