CX046786

Overview
NameCX046786
Unique NameCX046786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_TRYBB (Structure-specific endonuclease subunit SLX1 homolog OS=Trypanosoma brucei brucei GN=Tb927.3.1220 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.754e-19
Identity = 46/125 (36.80%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKR-RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKY 518
            F   YLLTSL P+ +G  YIG+TVNP RR+RQHNGE+  GA RTK+  RPW +++C+ GF  +  AL+FEW WQ+P +S  ++   +  +    + + + +   +L    +    + ++ F  ++
Sbjct:    5 FHCVYLLTSLDPQCEGAHYIGYTVNPIRRLRQHNGELVNGARRTKRNGRPWLLLMCVSGFGEDRIALKFEWCWQNPSKSTRLKSHVSQLRCVHKLTHAVGVLLLLLRTELFSRLQLTLHIFDREH 129          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_SCHJY (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=slx1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMES 380
            F+ CYLL S     +   YIG T +P RR+RQHNGEI+ GA +TK+ RPW++   ++GFPT ++ALQFEW WQHP  +
Sbjct:    2 FYCCYLLVSEKAASRS-VYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTKIAALQFEWVWQHPQST 78          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_CRYPV (Structure-specific endonuclease subunit SLX1 homolog OS=Cryptosporidium parvum GN=cgd2_4280 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 3
Query:  156 CYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFS----------------GVANKIKLAFTMLNLPNWESFNIKVNYF 506
            CY L S     K  +YIG++VNP RR+RQHNGEI+ GA +TK   PW + +C+ GFP  V+AL+FEWAWQHP      R    ++K                    +  ++ +   M  L  W++ N+ V  F
Sbjct:   10 CYFLLSEAK--KKASYIGYSVNPCRRLRQHNGEIKKGAKKTKSGVPWNLGICVGGFPDRVAALRFEWAWQHPNICKVTRDNIESWKIVKTKKTSENKRILNKRQWSIQQRVSILLCMTTLEPWKNMNLTVFVF 140          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_CANGA (Structure-specific endonuclease subunit SLX1 OS=Candida glabrata GN=SLX1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 51/129 (39.53%), Postives = 78/129 (60.47%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESFNIKVNYFSTK 515
            F+ CYLL S+  R     YIG T NP RR+RQHNG + R GA RTK+   RPWEMV  +YGFP+ ++ALQFE AWQH  ++  ++      K+  G   + +K+ +  ++L    +   ++ +++F+ K
Sbjct:   10 FYGCYLLQSISKRQS--FYIGSTPNPVRRLRQHNGSLSRGGAYRTKRDGTRPWEMVAIVYGFPSRIAALQFEHAWQHGYQTRYIKSQDRVVKTRKGGRSIHHKLAMITSLLKNEYFRYMDLTLHFFNQK 136          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_CAEBR (Structure-specific endonuclease subunit SLX1 homolog OS=Caenorhabditis briggsae GN=giyd-1 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  147 FFACYLLTSLCPR--FKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQ-AAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHMKVQ 569
            F+  Y L S   R  +K   YIG+TV+P RRI QHNG   + GA +T  R PW+MV  ++GFP +V+AL+FEWAWQ+P  S ++++      +  +  A ++++A  ++N   +  F +   + +TK         + P H+K++
Sbjct:  167 FYGVYCLISRSERQCYKNRCYIGYTVDPNRRIMQHNGGRFKGGAKKTDSRGPWDMVCVVHGFPNHVAALRFEWAWQNPAVSKSLKEKQLKKERKETPFAYQLRIACELMNSEAFSRFALTFRWLNTKEELPFPISCTPPNHVKLR 311          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_DROGR (Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila grimshawi GN=GH19497 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.940e-18
Identity = 54/151 (35.76%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  147 FFACYLLTS--LCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMES--------LAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFSTKYSKHSSSCPSLPEHMKV 566
            F+  YLL S  L  R++G  Y+GFTVNP+RRI QHN G    GA +T ++ PW+MV+ ++GFP N++ALQFEWAWQ P  S        L  +Q   T   ++      ++   ML +  W    + V +  ++  +       LP H+++
Sbjct:   17 FYGVYLLCSQSLDARYRGKCYVGFTVNPKRRIGQHNRGCDFGGAHKTSRKGPWQMVMIVHGFPNNIAALQFEWAWQQPALSTRLKCYPELRRKQPRETHFDYN-----FRIVNRMLGIGPWHRLPLTVRWLESECER--GFVVPLPPHVRI 160          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_VANPO (Structure-specific endonuclease subunit SLX1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 57/131 (43.51%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKR--RPWEMVLCIYGFPTNVSALQFEWAWQH-------PMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFS 509
            F+ CYLL S+    K   YIG T NP RR+RQHNG +   GA RTK+   RPWEMVL +YGF + ++ALQFE AWQH       PM+   ++ A     S   V +K+ L   +L    +   N+KV++FS
Sbjct:   21 FYCCYLLQSI--NKKQSFYIGSTPNPVRRLRQHNGNLSNGGAYRTKREGTRPWEMVLVVYGFTSKIAALQFEHAWQHGYKTHYIPMDDRIMKNA----NSGRTVHHKLGLVRQLLANVYFRHMNLKVHFFS 145          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_SCHPO (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe GN=slx1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.627e-18
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNYFS-TKYSK 524
            F+ CYLL S   +  G  YIG T +P RR+RQHNGEI  GA +TK  RPW +   +YGFP  VSAL+FEW WQ+   S   +      K    +   +K    +++   W  + + + + + T +SK
Sbjct:    6 FYCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPNKVSALKFEWNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHLVDSDTWRRWPLNITFLNKTAFSK 132          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_CAEEL (Structure-specific endonuclease subunit SLX1 homolog OS=Caenorhabditis elegans GN=giyd-1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 51/146 (34.93%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  147 FFACYLLTSLCPR--FKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQ-AAATFKSFSGVANKIKLAFTMLNLPNWESFNIKVNY-FSTKYSKHSSSCPSLPEHMKVQ 569
            F+  Y L S   R  +K   YIG+TV+P RRI QHNG   + GA +T  R PW+MV  ++GFP +V+AL FEWAWQ+P+ S ++++      +  +  A ++++A  ++N   +  F +   +  +T+     +SC   P+H K++
Sbjct:  172 FYGVYCLISRSDRPCYKNRCYIGYTVDPNRRIMQHNGGRDKGGAKKTDSRGPWDMVCVVHGFPNHVAALHFEWAWQNPLVSKSLKEKQLRKERKETPFAFQLRIACELMNSSAFCRFALTFRWLITTEELPFPTSCVP-PDHTKLR 316          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_YEAS6 (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.778e-17
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESFNIKVNYFSTK 515
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  + +     K  +G   + +K+ L   +L    ++  N+ V+ F+ K
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVDVFNIK 139          
The following BLAST results are available for this feature:
BLAST of CX046786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SLX1_TRYBB1.754e-1936.80Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_SCHJY3.909e-1952.56Structure-specific endonuclease subunit slx1 OS=Sc... [more]
SLX1_CRYPV8.707e-1936.84Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_CANGA1.137e-1839.53Structure-specific endonuclease subunit SLX1 OS=Ca... [more]
SLX1_CAEBR1.137e-1834.48Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_DROGR1.940e-1835.76Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_VANPO4.321e-1843.51Structure-specific endonuclease subunit SLX1 OS=Va... [more]
SLX1_SCHPO9.627e-1837.80Structure-specific endonuclease subunit slx1 OS=Sc... [more]
SLX1_CAEEL3.658e-1734.93Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_YEAS64.778e-1738.76Structure-specific endonuclease subunit SLX1 OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B09-D17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046786 ID=CX046786; Name=CX046786; organism=Citrus sinensis; type=EST; length=844bp
GAGAGAGAAAGATGCGGAAGAGAAAGGGAAGCAAAGCAGTTCATGACCCA
GAAACCCTAATTTCAAAGTCAAAAACTCTAGATCCAGTAAAAGATGATTT
TGAAGAAGAAGACGAAGAACAGAAAGCCAAAGATCAACAAAAAGGGTTCT
TCGCTTGTTATCTTTTAACCTCCTTATGCCCCCGTTTCAAAGGCCACACC
TATATCGGATTCACTGTGAACCCGCGTCGTAGAATTAGGCAGCATAATGG
TGAAATAAGGTGTGGAGCAGTGAGGACGAAGAAAAGGCGCCCTTGGGAAA
TGGTTTTATGCATTTATGGTTTCCCAACAAATGTTTCAGCTCTTCAGTTT
GAGTGGGCTTGGCAGCATCCAATGGAATCACTGGCTGTAAGGCAGGCAGC
TGCTACTTTTAAATCCTTTTCTGGAGTTGCCAATAAAATCAAACTCGCAT
TCACGATGCTCAACCTCCCTAACTGGGAGAGCTTTAACATCAAGGTGAAC
TATTTTTCAACAAAATACTCTAAACATTCTTCTAGTTGCCCAAGCCTGCC
AGAGCACATGAAGGTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATA
CTGAAAGAGATGAGAGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAG
GACTACAATGAAGCTAGTGAAAACAGTGGAAGTTTAGAGGAAACCTGCGG
AGATGTGACAATTAATTTTTCATCAGATTATTCTTTTAGCATTTATGAGG
CTGCTGATGAACAATGTGGTCAATTTAAGCAATATGGAAATGAGCAGCCA
AGAGACTCATCATGTCTAGAAGTAAACTGCCAACAGCCATTTGG
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