CX046786

Overview
NameCX046786
Unique NameCX046786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_YEAS1 (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.778e-17
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESFNIKVNYFSTK 515
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  + +     K  +G   + +K+ L   +L    ++  N+ V+ F+ K
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVDVFNIK 139          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_ASHGO (Structure-specific endonuclease subunit SLX1 OS=Ashbya gossypii GN=SLX1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.778e-17
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKR--RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESFNIKVNYFS 509
            F+ CYLL S+  R     YIG T NP RR+RQHNG + + GA RTK++  RPWE+   + GFP+ ++ALQFE AWQHP ++  ++      K   G   +  ++ +   +L+ P ++  ++ V+ FS
Sbjct:   13 FYCCYLLRSIPKRLS--YYIGSTPNPVRRLRQHNGLLTKGGAYRTKRQGTRPWELAASVSGFPSKIAALQFEHAWQHPYQTRFIKSEDRIVKKKGGGRSIHQRLAVLKLLLHHPFFKVMSLVVHLFS 137          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_YEAST (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae GN=SLX1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESFNIKVNYFSTK 515
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  + +     K  +G   + +K+ L   +L    ++  N+ V  F+ K
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVEVFNIK 139          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_YEAS7 (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae (strain YJM789) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESFNIKVNYFSTK 515
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  + +     K  +G   + +K+ L   +L    ++  N+ V  F+ K
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVEVFNIK 139          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_USTMA (Structure-specific endonuclease subunit SLX1 OS=Ustilago maydis GN=SLX1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.150e-17
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP 371
            F+ACY L SL     G TYIG T  P RR RQHNG +  GA +T + RPWEM   +YGF + ++ALQFEWAW  P
Sbjct:   13 FYACYFLRSLST--PGTTYIGSTPAPPRRKRQHNGHLTQGAYKTSRARPWEMECIVYGFSSKIAALQFEWAWAKP 85          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_BOTFB (Structure-specific endonuclease subunit slx1 OS=Botryotinia fuckeliana (strain B05.10) GN=slx1 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.064e-16
Identity = 51/136 (37.50%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFE-WAWQHPMESLAV----RQAAATFKSFSG--------VANKIKLAFTMLNLPNWESFNIKVNYFS 509
            F+ CYLL S         Y+G T NP RR+RQHNG ++ GAVRT +   RPWEM   + GFPT+++ALQF+ WAWQ+P  +L +    R + AT K  SG        + + +     +L +P++  + +++ +F+
Sbjct:   15 FYGCYLLRSTIRH--SALYVGSTPNPVRRLRQHNGLVKGGAVRTSRGNLRPWEMACIVTGFPTSIAALQFDRWAWQNPHITLHIPPSSRISHATQKKRSGHPKRPRHTLQSLLSNLHILLTVPSFSRWPLEIKFFA 148          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_MALGO (Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  150 FACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR----------QAAATFKSFSGVANKIKLAFTMLNLPN 473
            + CY L SL       TYIG T +P RR+RQHNG ++ GA  T+  RPW M + +YGFP+ ++ALQFEW+WQ P  S  +R          +++AT   ++G ++K     T  + P+
Sbjct:   15 YVCYCLRSLSR--PNQTYIGSTPDPIRRLRQHNGLVKQGAFYTRMARPWTMDVVVYGFPSKLAALQFEWSWQKPHASRHLRVMHDDGTRPNKSSATAAVYAGRSSKPLFPATRSSAPS 130          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_GIALA (Structure-specific endonuclease subunit SLX1 homolog OS=Giardia lamblia GN=GL50803_16475 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  144 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAAT 407
            G FACY L +         YIGFT NP RRIRQHN +I  GA +T +  PW MVL + GF T VSAL+FE+ W +P  S  V   +AT
Sbjct:    9 GLFACYCLVAESSESPKRCYIGFTNNPLRRIRQHNRKIAGGARKTSRYGPWRMVLFVGGFSTKVSALKFEYIWTYPTRSRYVNCISAT 96          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_MONBE (Structure-specific endonuclease subunit SLX1 homolog OS=Monosiga brevicollis GN=8836 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  204 IGFTVNPRRRIRQHNGEIRCGAVRTKKRR-PWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQA 398
            IGFT +P RR+RQHN EI  GAVRT + +  W+M   +YGFP  V+AL+FEWAWQHP++S  +R A
Sbjct:   43 IGFTTDPVRRLRQHNSEIGGGAVRTTRAKGSWDMAAIVYGFPNKVAALRFEWAWQHPLKSRRLRDA 108          
BLAST of CX046786 vs. ExPASy Swiss-Prot
Match: SLX1_ASPFU (Structure-specific endonuclease subunit slx1 OS=Aspergillus fumigatus GN=slx1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.283e-16
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  147 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRT--KKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR 392
            F+ CYLL S         YIG T NP RR+ QHNG ++ GA RT  +K RPWEMVL + GF + ++ALQFEWAWQ+P  S  +R
Sbjct:   15 FYCCYLLRSTVRH--ASLYIGSTPNPARRLIQHNGVVKGGARRTAAEKLRPWEMVLVVEGFMSRLAALQFEWAWQNPWYSRHLR 96          
The following BLAST results are available for this feature:
BLAST of CX046786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SLX1_YEAS14.778e-1738.76Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_ASHGO4.778e-1738.58Structure-specific endonuclease subunit SLX1 OS=As... [more]
SLX1_YEAST6.240e-1738.76Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_YEAS76.240e-1738.76Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_USTMA8.150e-1754.67Structure-specific endonuclease subunit SLX1 OS=Us... [more]
SLX1_BOTFB1.064e-1637.50Structure-specific endonuclease subunit slx1 OS=Bo... [more]
SLX1_MALGO2.371e-1638.98Structure-specific endonuclease subunit SLX1 OS=Ma... [more]
SLX1_GIALA2.371e-1650.00Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_MONBE5.283e-1657.58Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_ASPFU5.283e-1652.38Structure-specific endonuclease subunit slx1 OS=As... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B09-D17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046786 ID=CX046786; Name=CX046786; organism=Citrus sinensis; type=EST; length=844bp
GAGAGAGAAAGATGCGGAAGAGAAAGGGAAGCAAAGCAGTTCATGACCCA
GAAACCCTAATTTCAAAGTCAAAAACTCTAGATCCAGTAAAAGATGATTT
TGAAGAAGAAGACGAAGAACAGAAAGCCAAAGATCAACAAAAAGGGTTCT
TCGCTTGTTATCTTTTAACCTCCTTATGCCCCCGTTTCAAAGGCCACACC
TATATCGGATTCACTGTGAACCCGCGTCGTAGAATTAGGCAGCATAATGG
TGAAATAAGGTGTGGAGCAGTGAGGACGAAGAAAAGGCGCCCTTGGGAAA
TGGTTTTATGCATTTATGGTTTCCCAACAAATGTTTCAGCTCTTCAGTTT
GAGTGGGCTTGGCAGCATCCAATGGAATCACTGGCTGTAAGGCAGGCAGC
TGCTACTTTTAAATCCTTTTCTGGAGTTGCCAATAAAATCAAACTCGCAT
TCACGATGCTCAACCTCCCTAACTGGGAGAGCTTTAACATCAAGGTGAAC
TATTTTTCAACAAAATACTCTAAACATTCTTCTAGTTGCCCAAGCCTGCC
AGAGCACATGAAGGTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATA
CTGAAAGAGATGAGAGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAG
GACTACAATGAAGCTAGTGAAAACAGTGGAAGTTTAGAGGAAACCTGCGG
AGATGTGACAATTAATTTTTCATCAGATTATTCTTTTAGCATTTATGAGG
CTGCTGATGAACAATGTGGTCAATTTAAGCAATATGGAAATGAGCAGCCA
AGAGACTCATCATGTCTAGAAGTAAACTGCCAACAGCCATTTGG
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