CX046781

Overview
NameCX046781
Unique NameCX046781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XYLFA (30S ribosomal protein S12 OS=Xylella fastidiosa GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTSTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XANOR (30S ribosomal protein S12 OS=Xanthomonas oryzae pv. oryzae GN=rpsL PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XANOP (30S ribosomal protein S12 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XANOM (30S ribosomal protein S12 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XANCP (30S ribosomal protein S12 OS=Xanthomonas campestris pv. campestris GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XANC8 (30S ribosomal protein S12 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XANC5 (30S ribosomal protein S12 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_XANAC (30S ribosomal protein S12 OS=Xanthomonas axonopodis pv. citri GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            LD+CPQ++GVC RV T TPKKPNSALRK+AKVRL+N+ ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+  RR+GRSKYGA++PKS
Sbjct:   24 LDKCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNQEEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDAAGVAKRRQGRSKYGAKRPKS 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_PELPB (30S ribosomal protein S12 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 89/101 (88.12%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L++CPQK+GVC RV T TPKKPNSALRK+A+VRLSN+ ++ AYIPGEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+ DR++ RSKYGA++PK+
Sbjct:   24 LEKCPQKRGVCTRVYTTTPKKPNSALRKVARVRLSNKIEVTAYIPGEGHNLQEHSIVLIRGGRVKDLPGVRYHIVRGSLDTSGVADRKQSRSKYGAKQPKA 124
[Close]
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_CHLPD (30S ribosomal protein S12 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 71/101 (70.30%), Postives = 89/101 (88.12%), Query Frame = 3 
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L++CPQK+GVC RV T TPKKPNSALRK+A+VRLSN+ ++ AYIPGEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  D  G+ DR++ RSKYGA++PK+
Sbjct:   24 LEKCPQKRGVCTRVYTTTPKKPNSALRKVARVRLSNKIEVTAYIPGEGHNLQEHSIVLIRGGRVKDLPGVRYHIVRGSLDTSGVADRKQSRSKYGAKQPKA 124
The following BLAST results are available for this feature:
BLAST of CX046781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS12_XYLFA9.192e-3870.3030S ribosomal protein S12 OS=Xylella fastidiosa GN... [more]
RS12_XANOR9.192e-3870.3030S ribosomal protein S12 OS=Xanthomonas oryzae pv... [more]
RS12_XANOP9.192e-3870.3030S ribosomal protein S12 OS=Xanthomonas oryzae pv... [more]
RS12_XANOM9.192e-3870.3030S ribosomal protein S12 OS=Xanthomonas oryzae pv... [more]
RS12_XANCP9.192e-3870.3030S ribosomal protein S12 OS=Xanthomonas campestri... [more]
RS12_XANC89.192e-3870.3030S ribosomal protein S12 OS=Xanthomonas campestri... [more]
RS12_XANC59.192e-3870.3030S ribosomal protein S12 OS=Xanthomonas campestri... [more]
RS12_XANAC9.192e-3870.3030S ribosomal protein S12 OS=Xanthomonas axonopodi... [more]
RS12_PELPB9.192e-3870.3030S ribosomal protein S12 OS=Pelodictyon phaeoclat... [more]
RS12_CHLPD9.192e-3870.3030S ribosomal protein S12 OS=Chlorobium phaeobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B07-D13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046781 ID=CX046781; Name=CX046781; organism=Citrus sinensis; type=EST; length=891bp
CTTTGGATCAATGTCCCCAGAAGCAAGGAGTATGCCTGCGTGTTTCGACG
AGAACACCGAAAAAACCTAATTCAGCTCTACGTAAGATAGCCAAAGTACG
GTTGAGCAATCGACATGATATATTTGCTTACATTCCGGGCGAAGGTCATA
ATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGAT
TTGCCAGGTGTGAAATTCCATTGTATTCGAGGAGTCAAGGATTTGCTGGG
AATTCCGGATCGAAGAAGAGGCAGATCAAAATATGGTGCAGAAAAACCAA
AATCGATATGAATGGAAGATGCCTCTTGAACTTGTTTTTTCGGTCAGTCG
AGGGCAACGTTACGCCCTAAAATAGAACTATACGGAGCCCTTCCGATTGT
TAGTCTTGCTACACTACACGAGTCTAGGGTGAAGTTGAAGCAGGAGATCG
ATCTCAAAACAAAGCCTGACCTAAACCCTTAGGACAAATTAGTTTGATGC
ACAGAACTTAACACTCAAGCTCCCTTATAAATTCTAGTTTTTAAAAAAAT
GAGTATGAAACCCCTATCCCTTACCTTGCCGGAACGGGAAAGGGCTCTCT
TGCTTTGCTTGTTTGCTTTGTTCCTTATAGCACTGTGTCAAGTTCTCCTT
TCATTGGTCTCGGGTGAAGTATCTGTTATAAGCGAATCTTTCCTTCCTTG
GCGGATGGTGGCATACTCCCTTCTGGCCTATCCAAGTGCAACTTTTCATT
CTAAAAAAAGAGAAAGGGCGATAGCTTTCACTTCTCTCATTCGGAGGGGC
TCCTCAAAGGCTCCCCTTAGAGTGGAAATTTCCCCGCCTGCAGAGTGTAA
GTATAGAGCTGGGGTCTCATTCCAGTGATTTTCATCTCCTT
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