CX046781

Overview
NameCX046781
Unique NameCX046781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_AZOSB (30S ribosomal protein S12 OS=Azoarcus sp. (strain BH72) GN=rpsL PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.016e-36
Identity = 70/100 (70.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPK 302
            L+ CPQK+GVC RV T TPKKPNSALRK+AKVRL+N  ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  DL G+ DR++ RSKYGA++PK
Sbjct:   24 LEACPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQSRSKYGAKRPK 123          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_SYNFM (30S ribosomal protein S12 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 71/100 (71.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPK 302
            L  CPQK+GVC+RV T TPKKPNSALRKIA+VRL+N  ++ +YIPG GHNLQEHS+VLIRGGRVKDLPGV++H IRG  D LG+ DR++GRSKYG ++PK
Sbjct:   24 LQCCPQKRGVCVRVYTTTPKKPNSALRKIARVRLTNGIEVTSYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDALGVADRKQGRSKYGTKRPK 123          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_RALSO (30S ribosomal protein S12 OS=Ralstonia solanacearum GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L+ CPQ++GVC RV T TPKKPNSALRK+AKVRL+N  ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  DL G+ DR++ RSKYGA++PK+
Sbjct:   24 LENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKA 124          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_RALPJ (30S ribosomal protein S12 OS=Ralstonia pickettii (strain 12J) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L+ CPQ++GVC RV T TPKKPNSALRK+AKVRL+N  ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  DL G+ DR++ RSKYGA++PK+
Sbjct:   24 LENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKA 124          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_RALEJ (30S ribosomal protein S12 OS=Ralstonia eutropha (strain JMP134) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L+ CPQ++GVC RV T TPKKPNSALRK+AKVRL+N  ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  DL G+ DR++ RSKYGA++PK+
Sbjct:   24 LENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKA 124          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_RALEH (30S ribosomal protein S12 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L+ CPQ++GVC RV T TPKKPNSALRK+AKVRL+N  ++ +YI GEGHNLQEHS+VLIRGGRVKDLPGV++H +RG  DL G+ DR++ RSKYGA++PK+
Sbjct:   24 LENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKA 124          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_PARDP (30S ribosomal protein S12 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPK 302
            L  CPQK+GVC RV T TPKKPNSA+RK+AKVRL+N  ++ +YIPGE HNLQEHS+VLIRGGRVKDLPGV++H +RGV D  G+ DRR+ RSKYGA++PK
Sbjct:   24 LQSCPQKRGVCTRVYTTTPKKPNSAMRKVAKVRLTNGFEVISYIPGEKHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGVKDRRQRRSKYGAKRPK 123          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_NOVAD (30S ribosomal protein S12 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 68/100 (68.00%), Postives = 87/100 (87.00%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPK 302
            ++Q PQK+GVC RV T TPKKPNSALRK+AK+RL+N  ++ +YIPGEGHNLQEHS+VLIRGGRV+DLPGV++H +RGV D  G+ DR++ RSKYGA++PK
Sbjct:   24 MEQNPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNSREVISYIPGEGHNLQEHSVVLIRGGRVRDLPGVRYHVLRGVLDTQGVKDRKQSRSKYGAKRPK 123          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_METNO (30S ribosomal protein S12 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 69/100 (69.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPK 302
            L+ CPQK+GVC RV T TPKKPNSALRK+AKVRL+N  ++  YIPGEGHNLQEHS+V+IRGGRVKDLPGV++H +RGV D  G+ +R++ RSKYGA++PK
Sbjct:   24 LEACPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHILRGVLDTQGVKNRKQRRSKYGAKRPK 123          
BLAST of CX046781 vs. ExPASy Swiss-Prot
Match: RS12_METFK (30S ribosomal protein S12 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsL PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.327e-36
Identity = 68/101 (67.33%), Postives = 87/101 (86.14%), Query Frame = 3
Query:    3 LDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNRHDIFAYIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKS 305
            L+ CPQK+GVC RV T TPKKPNSALRK+AKVRL+N +++ +YI GEGHNLQEHS+VL+RGGRVKDLPGV++H +RG  D  G+ DR++ RSKYGA++PK+
Sbjct:   24 LESCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGYEVISYIGGEGHNLQEHSVVLLRGGRVKDLPGVRYHMVRGSLDTAGVKDRKQARSKYGAKRPKA 124          
The following BLAST results are available for this feature:
BLAST of CX046781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS12_AZOSB1.016e-3670.0030S ribosomal protein S12 OS=Azoarcus sp. (strain ... [more]
RS12_SYNFM1.327e-3671.0030S ribosomal protein S12 OS=Syntrophobacter fumar... [more]
RS12_RALSO1.327e-3668.3230S ribosomal protein S12 OS=Ralstonia solanacearu... [more]
RS12_RALPJ1.327e-3668.3230S ribosomal protein S12 OS=Ralstonia pickettii (... [more]
RS12_RALEJ1.327e-3668.3230S ribosomal protein S12 OS=Ralstonia eutropha (s... [more]
RS12_RALEH1.327e-3668.3230S ribosomal protein S12 OS=Ralstonia eutropha (s... [more]
RS12_PARDP1.327e-3670.0030S ribosomal protein S12 OS=Paracoccus denitrific... [more]
RS12_NOVAD1.327e-3668.0030S ribosomal protein S12 OS=Novosphingobium aroma... [more]
RS12_METNO1.327e-3669.0030S ribosomal protein S12 OS=Methylobacterium nodu... [more]
RS12_METFK1.327e-3667.3330S ribosomal protein S12 OS=Methylobacillus flage... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_10B07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B07-D13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046781 ID=CX046781; Name=CX046781; organism=Citrus sinensis; type=EST; length=891bp
CTTTGGATCAATGTCCCCAGAAGCAAGGAGTATGCCTGCGTGTTTCGACG
AGAACACCGAAAAAACCTAATTCAGCTCTACGTAAGATAGCCAAAGTACG
GTTGAGCAATCGACATGATATATTTGCTTACATTCCGGGCGAAGGTCATA
ATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGAT
TTGCCAGGTGTGAAATTCCATTGTATTCGAGGAGTCAAGGATTTGCTGGG
AATTCCGGATCGAAGAAGAGGCAGATCAAAATATGGTGCAGAAAAACCAA
AATCGATATGAATGGAAGATGCCTCTTGAACTTGTTTTTTCGGTCAGTCG
AGGGCAACGTTACGCCCTAAAATAGAACTATACGGAGCCCTTCCGATTGT
TAGTCTTGCTACACTACACGAGTCTAGGGTGAAGTTGAAGCAGGAGATCG
ATCTCAAAACAAAGCCTGACCTAAACCCTTAGGACAAATTAGTTTGATGC
ACAGAACTTAACACTCAAGCTCCCTTATAAATTCTAGTTTTTAAAAAAAT
GAGTATGAAACCCCTATCCCTTACCTTGCCGGAACGGGAAAGGGCTCTCT
TGCTTTGCTTGTTTGCTTTGTTCCTTATAGCACTGTGTCAAGTTCTCCTT
TCATTGGTCTCGGGTGAAGTATCTGTTATAAGCGAATCTTTCCTTCCTTG
GCGGATGGTGGCATACTCCCTTCTGGCCTATCCAAGTGCAACTTTTCATT
CTAAAAAAAGAGAAAGGGCGATAGCTTTCACTTCTCTCATTCGGAGGGGC
TCCTCAAAGGCTCCCCTTAGAGTGGAAATTTCCCCGCCTGCAGAGTGTAA
GTATAGAGCTGGGGTCTCATTCCAGTGATTTTCATCTCCTT
back to top