DN618418

Overview
NameDN618418
Unique NameDN618418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618418 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 93/201 (46.27%), Postives = 131/201 (65.17%), Query Frame = 1
Query:   46 ITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLI 645
            +TVLSIDGGG+KGIIPGTIL FLE +LQ +D   +AR+ADYFD++ GTSTGGL+ +M+T PN++ RP  AA +I  F+FEH P IF              SS  ++  P YDGKY+  + +E L +  +   LT + I + DIK  +PVIF+ +++ K    +A++ DIC  T+AAPTY P H+F T ++  GD   F+L+
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTSMITTPNENNRPFAAANEIVPFFFEHGPHIFN-------------SSTGQFFGPKYDGKYLMQVLQENLGETRVHQALTEVAISSLDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFTT-NTINGDKYEFNLV 215          
BLAST of DN618418 vs. ExPASy Swiss-Prot
Match: PAT12_SOLTU (Patatin-12 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.006e-44
Identity = 94/201 (46.77%), Postives = 129/201 (64.18%), Query Frame = 1
Query:   46 ITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLI 645
            +TVLSIDGGG+KGIIPGTIL FL  +LQ +D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AA +I  FYFEH P IF              SS  ++  P YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ +++ K    +A++ DIC  T+AAP Y P H+F+T  S  GD   F+L+
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLGGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFN-------------SSTGQFFGPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLV 215          
BLAST of DN618418 vs. ExPASy Swiss-Prot
Match: PAT17_SOLCD (Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.717e-44
Identity = 93/204 (45.59%), Postives = 135/204 (66.18%), Query Frame = 1
Query:   37 GKKITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLI 645
            G+ +TVLSIDGGG++GIIP TIL FLE +LQ++D   +AR+ADYFD++ GTSTGGL+  M++ PN++ RP  AAK+I  FYFEH P+IF   +  G  L            P YDGKY+  + +E L +  +   LT ++I +FDIK  +PVIF+ +++      +A++ DI   T+AAPTY P H+FVT +++ GD   F+L+
Sbjct:   26 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHGPQIF---NPSGQILG-----------PKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVT-NTSNGDEYEFNLV 214          
BLAST of DN618418 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.242e-44
Identity = 95/201 (47.26%), Postives = 129/201 (64.18%), Query Frame = 1
Query:   46 ITVLSIDGGGVKGIIPGTILAFLESRLQDLDG-PNARIADYFDIVAGTSTGGLIGTMLTAPNKDGRPMYAAKDINNFYFEHCPKIFPQLSRGGNFLRSIISSLSKWVRPMYDGKYIRSLTKEILEDITIKDTLTNLIIPTFDIKRLQPVIFSSNDVKKGALKNARLADICVGTSAAPTYLPAHHFVTKDSTTGDTCSFDLI 645
            +TVLSIDGGG+KGIIPGTIL FLE +LQ +D   +AR+ADYFD++ GTSTGGL+  M+T PN++ RP  AA +I  FYFEH P IF   S  G F R             YDGKY+  + +E L +  +   LT + I +FDIK  +PVIF+ +++ K    +A++ DIC  T+AAPTY P H+F T ++  GD    +L+
Sbjct:   29 VTVLSIDGGGIKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFN--SSTGQFFRK------------YDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYFPPHYFAT-NTINGDKYELNLV 214          
The following BLAST results are available for this feature:
BLAST of DN618418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATD3_SOLTU1.006e-4446.27Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT12_SOLTU1.006e-4446.77Patatin-12 OS=Solanum tuberosum PE=2 SV=1[more]
PAT17_SOLCD1.717e-4445.59Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1[more]
PAT16_SOLTU2.242e-4447.26Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02I17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618418 ID=DN618418; Name=DN618418; organism=Citrus sinensis; type=EST; length=647bp
TCAAAACTCAAAATGATCGCTAGAACCATTGCCAAAGGCAAGAAAATAAC
CGTGCTAAGCATTGATGGAGGCGGTGTTAAAGGCATCATTCCTGGCACCA
TTTTAGCCTTTCTTGAATCCAGGCTTCAGGATTTGGATGGACCCAATGCG
AGAATAGCAGACTATTTTGATATAGTAGCAGGAACAAGCACAGGTGGGCT
AATAGGCACCATGCTTACAGCTCCCAACAAGGACGGCAGACCTATGTATG
CGGCTAAGGATATCAACAACTTCTATTTTGAGCACTGTCCTAAAATTTTC
CCTCAATTATCAAGGGGCGGAAACTTTCTAAGATCAATTATAAGCTCTTT
GAGTAAGTGGGTACGGCCAATGTATGATGGGAAGTACATACGGAGTCTTA
CAAAGGAGATACTAGAAGACATTACTATCAAAGACACCCTAACAAATTTG
ATCATTCCAACTTTTGACATCAAGCGACTTCAGCCAGTGATCTTCTCAAG
CAACGATGTGAAAAAAGGTGCATTGAAGAATGCCCGGCTAGCTGATATAT
GCGTTGGCACCTCTGCAGCTCCCACCTACTTGCCGGCTCACCATTTTGTG
ACAAAAGATTCAACAACCGGCGACACCTGCAGTTTTGATCTCATTGA
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