CX046771

Overview
NameCX046771
Unique NameCX046771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_SCHPO (Mediator of RNA polymerase II transcription subunit 31 OS=Schizosaccharomyces pombe GN=med31 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.208e-24
Identity = 49/97 (50.52%), Postives = 73/97 (75.26%), Query Frame = -1
Query:  479 KDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFW 769
            K PDD + RF +ELEFVQ L+NP Y+++LAQ++YFEDEAF+ YL+Y++YW+ PEY+KFI+YP CL+ L LL+N  FRN ++     +  + + ++ W
Sbjct:    9 KVPDD-KSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCLHMLTLLKNPQFRNDISRADLSKQVNDEIYYEW 104          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_AEDAE (Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = -1
Query:  452 DDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 760
            D  + RF  ELEFVQCLANP Y+H+LAQ  +F+D  FI YLKYL +W+ PE  K++ YP CLYFL+LLQ  +FR  + +    +    Q    W++Y   R +
Sbjct:   17 DAQKLRFQAELEFVQCLANPNYLHFLAQRGFFKDSNFINYLKYLLHWKDPEMAKYLKYPMCLYFLDLLQYEHFRREIVNAQCCKFIDDQAILLWQHYTRRRTR 119          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_TAESO (Mediator of RNA polymerase II transcription subunit 31 OS=Taenia solium GN=Ts24233 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  446 DDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHI 760
            +D   RF +ELEFVQ L NP Y+ +LAQ   F+   FI YL YLQYW+ P Y +FI YP CL+ L+LLQ+ +FR  +AH +       Q    WKNY   R + +
Sbjct:   25 EDPWVRFQIELEFVQSLGNPDYLTFLAQQGCFDKPEFINYLSYLQYWKSPSYSRFITYPFCLHMLDLLQSPDFRREVAHESVTRFIDDQMLLHWKNYLRKRAEMV 129          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_CAEBR (Mediator of RNA polymerase II transcription subunit 31 OS=Caenorhabditis briggsae GN=mdt-31 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.496e-21
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  458 PDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNR 763
            P+  + RF +E EFVQ LANP Y+++LAQ  YF++E F+ YLKYL YW+ P+Y + + +P CL+ LE LQ+  FR+AMA+  + +    Q    W+ Y   R
Sbjct:    4 PESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKNPQYARCLKFPQCLHMLEALQSQQFRDAMAYGPSAKFVEDQVVLQWQFYLRKR 105          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_CANAL (Mediator of RNA polymerase II transcription subunit 31 OS=Candida albicans GN=SOH1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.700e-21
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = -1
Query:  539 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFR 745
            R+ +ELEFVQ L+N  Y++YLAQN YF DE FI YL YLQYW +PEY KF++YP+CL+ L+LLQ+ NFR
Sbjct:   30 RWEIELEFVQSLSNIPYVNYLAQNNYFNDENFINYLNYLQYWTQPEYSKFLVYPNCLHILKLLQDENFR 98          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_CAEEL (Mediator of RNA polymerase II transcription subunit 31 OS=Caenorhabditis elegans GN=mdt-31 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = -1
Query:  458 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNR 751
            + RF +E EFVQ LANP Y+++LAQ  YF++E F+ YLKYL YW+ P+Y + + +P CL+ LE LQ+  FR++MA+  + +    Q    W+ Y   R
Sbjct:    8 KTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNYLKYLLYWKDPQYARCLKFPQCLHMLEALQSQQFRDSMAYGPSAKFVEDQVVLQWQFYLRKR 105          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_YARLI (Mediator of RNA polymerase II transcription subunit 31 OS=Yarrowia lipolytica GN=SOH1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  479 DGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFW 757
            D   RF  ELEFVQ LANP Y+ YLA N+Y E   F+ YL YL+YW+ P+Y +F++YP+CL+ L+LLQ A FR  ++ P   +    + ++ W
Sbjct:   23 DRSLRFEAELEFVQSLANPQYLSYLAHNKYLESPEFLNYLSYLEYWREPKYARFLVYPNCLHVLKLLQYATFRKEISRPDFAKQLMDEFYYAW 115          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_DEBHA (Mediator of RNA polymerase II transcription subunit 31 OS=Debaryomyces hansenii GN=SOH1 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  521 QRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHP 748
            +R+ +ELEFVQ LAN  Y+++LAQN Y  +  F+ Y++YL YW+ PEY K+++YP+CL+ L LLQN  FR  +  P
Sbjct:    7 KRWEIELEFVQSLANIQYLNHLAQNNYLSNPEFLNYIEYLNYWKEPEYSKYLVYPNCLHILTLLQNEEFRKNILIP 82          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_CRYNE (Mediator of RNA polymerase II transcription subunit 31 OS=Cryptococcus neoformans GN=SOH1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.982e-17
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = -1
Query:  530 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAM 745
            RF  ELEF+QCLA+P Y+H L    Y    AF+ YLKYL+YW+ P+Y++FI+YP CL +L LLQ   FR+ +
Sbjct:   32 RFQSELEFIQCLAHPQYLHELHIQGYLGKPAFLNYLKYLEYWREPQYVRFIIYPTCLVYLTLLQTELFRSRL 103          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_ENCCU (Mediator of RNA polymerase II transcription subunit 31 OS=Encephalitozoon cuniculi GN=SOH1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = -1
Query:  473 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELA-HRQQFFFWKN 745
            RF  ELEFVQ L NP Y+ +L +  +FE E F  YL+YL+YW+ PEY +F+ YP CL  LE L + N  N M    N  LA   QQ+F W N
Sbjct:    5 RFERELEFVQLLCNPDYLRWLTREGHFESEEFRSYLRYLEYWRSPEYSRFLTYPQCLAVLEHLNSENI-NDMLSDENFFLALGEQQYFIWLN 95          
The following BLAST results are available for this feature:
BLAST of CX046771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MED31_SCHPO4.208e-2450.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_AEDAE1.768e-2246.60Mediator of RNA polymerase II transcription subuni... [more]
MED31_TAESO1.146e-2145.71Mediator of RNA polymerase II transcription subuni... [more]
MED31_CAEBR1.496e-2144.12Mediator of RNA polymerase II transcription subuni... [more]
MED31_CANAL9.700e-2163.77Mediator of RNA polymerase II transcription subuni... [more]
MED31_CAEEL3.686e-2043.88Mediator of RNA polymerase II transcription subuni... [more]
MED31_YARLI6.287e-2046.24Mediator of RNA polymerase II transcription subuni... [more]
MED31_DEBHA2.236e-1750.00Mediator of RNA polymerase II transcription subuni... [more]
MED31_CRYNE4.982e-1752.78Mediator of RNA polymerase II transcription subuni... [more]
MED31_ENCCU1.110e-1648.91Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B02-D3-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046771 ID=CX046771; Name=CX046771; organism=Citrus sinensis; type=EST; length=862bp
TTTTTTTTTTTTTTTTTAAAAAAAACAATGCAAGATTAAATAGAGATATC
AATTTCACAAAGTATCCAAAAAGAAATGATCACATATTCGATCTAAAAGC
TGCAAGAACAATTTCAAAATCTATACATATAGAATAAATGACTATTCAGC
TATTCCCTCTTCAAATCACATAAACTGATTGGAATAAAAAAGATTACCTC
ATAAGTTTAAGGCACAGGAATGTTATGCCAATTCAACCATCTTTCTTCCT
TTTTCTTCGATCAATGCTGCTACTCCTCATATCATTTTTCATCAAAGCTG
ATCCTGGGGGAATTCCATACTGCATAGGAAAAAGGGCTGGCCCTGAAGCA
GCTGTCACAGGAGTCGGCACAGGTGGTGCAGGTGGCAGAGGTGGAGCAGC
AGCAGGGGGTGGAGCCTCAGCAGGTTCAGGAAGAGGCCTTGGTAAAATGT
GCTTTAGTCGATTGTTTCTATAGTTCTTCCAGAAAAAGAATTGCTGCCTA
TGTGCCAACTCCTTGTTGGCAGGATGTGCCATAGCATTGCGGAAGTTTGC
ATTTTGTAAAAGTTCAAGAAAATAGAGGCAATGTGGATACATTATAAATT
TAATGTACTCCGGCCGTTGCCAGTACTGAAGATATTTCAAGTAACCAATG
AAAGCCTCGTCTTCAAAATAGCGATTCTGAGCCAAATAGTGAATGTAAGT
GGGATTAGCAAGACATTGAACGAATTCCAGTTCAAGCAAAAAGCGTTGTC
TCCCGTCGTCTGGATCTTTATACACCTTCTTTGGCGAGGATGGGGCATCG
GATGCTTCTTCACCGTCCTTGGCAGCGGCCATCTTATTTTATCACTTTTT
ACAAATTGAAAA
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