CX046771

Overview
NameCX046771
Unique NameCX046771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_PHANO (Mediator of RNA polymerase II transcription subunit 31 OS=Phaeosphaeria nodorum GN=SOH1 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-16
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = -1
Query:  512 GRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYP-HCLYFLELLQNANFRNAMAHP--ANK 754
            G  RF LELEFVQCLANP Y++YLA  +YF+   F+ YL YLQY+  P+YIKF+ +P   L  LELLQ   FR  +  P  ANK
Sbjct:   17 GFTRFELELEFVQCLANPVYLNYLATQKYFDKPEFVAYLDYLQYFAEPKYIKFLHHPGPTLRALELLQQERFRQDIITPGLANK 100          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_NEUCR (Mediator of RNA polymerase II transcription subunit 31 OS=Neurospora crassa GN=soh-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  521 ASDAPSSPKKVYKDPD-DGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYP-HCLYFLELLQNANFRNAMAHP 805
            A + P+ P     +P   G  RF LELEFVQ L NP Y+++LA  +   + AFI YL YLQYW RP Y+K+I YP   L  LELLQ   FR  +  P
Sbjct:   12 AREPPAPPGSGADEPKYGGYTRFELELEFVQALGNPLYLNHLASRKLLSNPAFIAYLDYLQYWSRPPYLKYITYPGPTLKNLELLQQEKFRQDIISP 108          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_USTMA (Mediator of RNA polymerase II transcription subunit 31 OS=Ustilago maydis GN=SOH1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = -1
Query:  464 SSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN-ANFRNAMAHPANKELAHRQQFFFWKNYRN 790
            +SP +  +     +  F  +LEF+  LANP Y+++LA +      +F  YLKYL Y++ P+Y+K++ YP  L+FL+LLQN   FR A   PA       +Q   W  +R+
Sbjct:   17 ASPSRDEQRRQANQAAFSRDLEFLSSLANPYYLNHLALSGALSSPSFKRYLKYLDYFRHPKYVKYLHYPQALHFLDLLQNEEEFRLACRDPAFAGEVMAKQIGHWATWRD 126          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_ASHGO (Mediator of RNA polymerase II transcription subunit 31 OS=Ashbya gossypii GN=SOH1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  551 SPKKVYKDPDDGRQ---RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN 787
            S +  ++   +G Q   RF +ELEFVQ LAN  Y+ +L  Q++ ++D  F  YLKYL+YW  P Y +FI+YP+CL+ L+LL +
Sbjct:    5 SSEPPFEPSSEGEQLPSRFEVELEFVQSLANIPYVTFLLTQHQIWQDPRFKAYLKYLEYWCEPPYTQFIVYPNCLFVLKLLNS 87          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_YEAST (Mediator of RNA polymerase II transcription subunit 31 OS=Saccharomyces cerevisiae GN=SOH1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  557 DAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 799
            +AP++P     D +    RF +ELEF+Q LAN  Y+ YL  Q + ++   F  YLKYL+YW  P Y + I+YP+CL+ L+LL
Sbjct:    7 NAPATPSS---DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVYPNCLFILKLL 85          
BLAST of CX046771 vs. ExPASy Swiss-Prot
Match: MED31_KLULA (Mediator of RNA polymerase II transcription subunit 31 OS=Kluyveromyces lactis GN=SOH1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.085e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  557 RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 745
            RF +ELEFVQ LAN  Y+ YL  Q + ++D  F  YLKYL+YW  PEY + I+YP+ L+ L+LL
Sbjct:   19 RFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLFVLKLL 82          
The following BLAST results are available for this feature:
BLAST of CX046771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MED31_PHANO1.449e-1654.76Mediator of RNA polymerase II transcription subuni... [more]
MED31_NEUCR5.508e-1647.42Mediator of RNA polymerase II transcription subuni... [more]
MED31_USTMA3.342e-1336.36Mediator of RNA polymerase II transcription subuni... [more]
MED31_ASHGO1.270e-1244.58Mediator of RNA polymerase II transcription subuni... [more]
MED31_YEAST3.128e-1143.90Mediator of RNA polymerase II transcription subuni... [more]
MED31_KLULA4.085e-1153.13Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B02-D3-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046771 ID=CX046771; Name=CX046771; organism=Citrus sinensis; type=EST; length=862bp
TTTTTTTTTTTTTTTTTAAAAAAAACAATGCAAGATTAAATAGAGATATC
AATTTCACAAAGTATCCAAAAAGAAATGATCACATATTCGATCTAAAAGC
TGCAAGAACAATTTCAAAATCTATACATATAGAATAAATGACTATTCAGC
TATTCCCTCTTCAAATCACATAAACTGATTGGAATAAAAAAGATTACCTC
ATAAGTTTAAGGCACAGGAATGTTATGCCAATTCAACCATCTTTCTTCCT
TTTTCTTCGATCAATGCTGCTACTCCTCATATCATTTTTCATCAAAGCTG
ATCCTGGGGGAATTCCATACTGCATAGGAAAAAGGGCTGGCCCTGAAGCA
GCTGTCACAGGAGTCGGCACAGGTGGTGCAGGTGGCAGAGGTGGAGCAGC
AGCAGGGGGTGGAGCCTCAGCAGGTTCAGGAAGAGGCCTTGGTAAAATGT
GCTTTAGTCGATTGTTTCTATAGTTCTTCCAGAAAAAGAATTGCTGCCTA
TGTGCCAACTCCTTGTTGGCAGGATGTGCCATAGCATTGCGGAAGTTTGC
ATTTTGTAAAAGTTCAAGAAAATAGAGGCAATGTGGATACATTATAAATT
TAATGTACTCCGGCCGTTGCCAGTACTGAAGATATTTCAAGTAACCAATG
AAAGCCTCGTCTTCAAAATAGCGATTCTGAGCCAAATAGTGAATGTAAGT
GGGATTAGCAAGACATTGAACGAATTCCAGTTCAAGCAAAAAGCGTTGTC
TCCCGTCGTCTGGATCTTTATACACCTTCTTTGGCGAGGATGGGGCATCG
GATGCTTCTTCACCGTCCTTGGCAGCGGCCATCTTATTTTATCACTTTTT
ACAAATTGAAAA
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